Journal
JOURNAL OF COMPUTATIONAL CHEMISTRY
Volume 23, Issue 7, Pages 755-757Publisher
WILEY-BLACKWELL
DOI: 10.1002/jcc.10025
Keywords
d2_cluster; sequence clustering; parallel algorithms; EST
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The exponential increase in expressed sequence tag (EST) sequence data amplifies the computational cost of clustering sequences such that new algorithms are required to analyze data at a greater rate. We have pa-rallelized d2-cluster on a SGI Origin 2000 multiprocessor and observed a speedup of approximately 100X on 126 processors when processing a 15,876 EST dataset. The parallelized d2-cluster code is obtainable from the SANBI website (http://w,A,w.sanbi.ac.za/CODES).
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