Journal
JOURNAL OF APPLIED MICROBIOLOGY
Volume 118, Issue 5, Pages 1152-1164Publisher
WILEY
DOI: 10.1111/jam.12771
Keywords
Bradyrhizobium japnicum; genotyping; indigenous population; organic farms; serotyping; soybean-bradyrhizobia
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Funding
- USDA-NIFA [2011-51300-30743]
- NIFA [2011-51300-30743, 579457] Funding Source: Federal RePORTER
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AimsBradyrhizobium from organic fields in Minnesota were isolated and genotyped to assess diversity of soybean-bradyrhizobia in organic farming systems that can be used to improve soybean productivity. Methods and ResultsSoil samples were collected from 25 organic fields in Minnesota during May to July 2012. Soybean (cv. Lambert) was used as a host to trap indigenous bradyrhizobia in each sample. Genetic diversity of Bradyrhizobium strains (n=733) was determined using the horizontal, fluorophore-enhanced, repetitive extragenic palindromic-PCR (HFERP) DNA fingerprinting technique and the soybean-bradyrhizobia were classified into 79 different genotypes. Of these, 15 dominant genotypes were found and were highly similar (>92% fingerprint similarity) to serotypes USDA 127 (404%), USDA 4 (318%) and USDA 123 (155%), which were the three main populations of soybean-bradyrhizobia in organic fields. ConclusionsBradyrhizobium japonicum serogroup USDA 4 strains were found to make up a previously unrecognized, predominant rhizobial population in the organic farming soils examined. The relative abundance of strain USDA 4 was negatively correlated with that of USDA 127 and this relationship may be influenced by the levels of NO3-N and other soil edaphic factors. Significance and Impact of the StudyThe local community of bradyrhizobia can be affected by applying inoculant bacteria to organic fields. Based on these results, soybean production in organic farms may be improved by displacing strains similar to USDA 4 with those better at nitrogen fixation and competitive ability than indigenous strains.
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