Journal
NUCLEIC ACIDS RESEARCH
Volume 31, Issue 13, Pages 3586-3588Publisher
OXFORD UNIV PRESS
DOI: 10.1093/nar/gkg618
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Funding
- NHGRI NIH HHS [R01 HG002602, HG02602-01] Funding Source: Medline
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A fundamental challenge facing biologists is to identify DNA binding sites for unknown regulatory factors, given a collection of genes believed to be coregulated. The program YMF identifies good candidates for such binding sites by searching for statistically overrepresented motifs. More specifically, YMF enumerates all motifs in the search space and is guaranteed to produce those motifs with greatest z-scores. This note describes the YMF web software, available at http://bio.cs.washington.edu/software.html.
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