Aromatic δ-peptides:: design, synthesis and structural studies of helical, quinoline-derived oligoamide foldamers

Oligoamides of 8-amino-4-isobutoxy-2-quinolinecarboxylic acid were designed and synthesized, and their helical structures were characterized in the solid state by single crystal X-ray diffraction, and in solution by H-1 NMR. The monomer methyl 4-isobutoxy-8-nitro-2-quinolinecarboxylate is easily prepared in three steps from 2-nitroaninile and dimethyl acetylene dicarboxylate. Successive hydrogenations of nitro groups, saponifications of esters and couplings of amines and acids via the acid chlorides gave a dimer, tetramer, hexamer, octamer, and decamer in a convergent fashion. The oligomers were shown to adopt a bent conformation stabilized by intramolecular hydrogen bonds between amide hydrogens and adjacent quinoline nitrogens. In the solid, the dimer adopts a planar crescent shape and the octamer a helical conformation. All NMR data are consistent with similar conformations in solution. The helices are apparently remarkably stable. Some of them remain helical even at 120degreesC in deuterated DMSO. The structural studies confirm the predictions made by computer and demonstrate the high potency of the design principles. (C) 2003 Elsevier Ltd. All rights reserved.