Journal
JOURNAL OF BIOTECHNOLOGY
Volume 106, Issue 2-3, Pages 135-146Publisher
ELSEVIER
DOI: 10.1016/j.jbiotec.2003.08.010
Keywords
microarrays; transcriptomics; data integration; gene expression analysis
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As a high throughput technique, microarray experiments produce large data sets, consisting of measured data, laboratory protocols, and experimental settings. We have implemented the open source platform EMMA to store and analyze these data. The system provides automated pipelines for data processing and has a modular architecture that can be easily extended. EMMA features detailed reports about spots and their corresponding measurements. In addition to routine data analysis algorithms, the system can be integrated with other components that contain additional data sources (e.g. genome annotation systems). (C) 2003 Elsevier B.V. All rights reserved.
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