Journal
BIOINFORMATICS
Volume 21, Issue 6, Pages 827-828Publisher
OXFORD UNIV PRESS
DOI: 10.1093/bioinformatics/bti098
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Funding
- NIDA NIH HHS [P01 DA12923, K05 DA00060, P01 DA124080] Funding Source: Medline
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PDZBase is a database that aims to contain all known PDZ-domain-mediated protein-protein interactions. Currently, PDZBase contains approximately 300 such interactions, which have been manually extracted from > 200 articles. The database can be queried through both sequence motif and keyword-based searches, and the sequences of interacting proteins can be visually inspected through alignments (for the comparison of several interactions), or as residue-based diagrams including schematic secondary structure information (for individual complexes).
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