Related references
Note: Only part of the references are listed.Contrasting genomic patterns and infection strategies of two co-existing Bacteroidetes podovirus genera
Karin Holmfeldt et al.
ENVIRONMENTAL MICROBIOLOGY (2014)
Shotgun metagenomics indicates novel family A DNA polymerases predominate within marine virioplankton
Helen F. Schmidt et al.
ISME JOURNAL (2014)
Genomic properties of Marine Group A bacteria indicate a role in the marine sulfur cycle
Jody J. Wright et al.
ISME JOURNAL (2014)
Viral tagging reveals discrete populations in Synechococcus viral genome sequence space
Li Deng et al.
NATURE (2014)
The elemental composition of virus particles: implications for marine biogeochemical cycles
Luis F. Jover et al.
NATURE REVIEWS MICROBIOLOGY (2014)
Modeling ecological drivers in marine viral communities using comparative metagenomics and network analyses
Bonnie L. Hurwitz et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell- and meta- genomics
Simon Roux et al.
ELIFE (2014)
Single-cell and population level viral infection dynamics revealed by phageFISH, a method to visualize intracellular and free viruses
Elke Allers et al.
ENVIRONMENTAL MICROBIOLOGY (2013)
Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products
Sergey Nurk et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2013)
Abundant SAR11 viruses in the ocean
Yanlin Zhao et al.
NATURE (2013)
The Pacific Ocean Virome (POV): A Marine Viral Metagenomic Dataset and Associated Protein Clusters for Quantitative Viral Ecology
Bonnie L. Hurwitz et al.
PLOS ONE (2013)
Genome of a SAR116 bacteriophage shows the prevalence of this phage type in the oceans
Ilnam Kang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean
Brandon K. Swan et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Twelve previously unknown phage genera are ubiquitous in global oceans
Karin Holmfeldt et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Expanding the Marine Virosphere Using Metagenomics
Carolina Megumi Mizuno et al.
PLOS GENETICS (2013)
Marine Viruses: Truth or Dare
Mya Breitbart
ANNUAL REVIEW OF MARINE SCIENCE, VOL 4 (2012)
Cultivated Single-Stranded DNA Phages That Infect Marine Bacteroidetes Prove Difficult To Detect with DNA-Binding Stains
Karin Holmfeldt et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2012)
Regional Variation in Lytic and Lysogenic Viral Infection in the Southern Ocean and Its Contribution to Biogeochemical Cycling
Claire Evans et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2012)
Single cell genomics: an individual look at microbes
Ramunas Stepanauskas
CURRENT OPINION IN MICROBIOLOGY (2012)
Genome sequences of siphoviruses infecting marine Synechococcus unveil a diverse cyanophage group and extensive phage-host genetic exchanges
Sijun Huang et al.
ENVIRONMENTAL MICROBIOLOGY (2012)
Phage-bacteria relationships and CRISPR elements revealed by a metagenomic survey of the rumen microbiome
Margret E. Berg Miller et al.
ENVIRONMENTAL MICROBIOLOGY (2012)
Phylogenomics of T4 cyanophages: lateral gene transfer in the 'core' and origins of host genes
J. Cesar Ignacio-Espinoza et al.
ENVIRONMENTAL MICROBIOLOGY (2012)
Genomic sequencing of uncultured microorganisms from single cells
Roger S. Lasken
NATURE REVIEWS MICROBIOLOGY (2012)
PhiSpy: a novel algorithm for finding prophages in bacterial genomes that combines similarity- and composition-based strategies
Sajia Akhter et al.
NUCLEIC ACIDS RESEARCH (2012)
PIPS: Pathogenicity Island Prediction Software
Siomar C. Soares et al.
PLOS ONE (2012)
Capturing Single Cell Genomes of Active Polysaccharide Degraders: An Unexpected Contribution of Verrucomicrobia
Manuel Martinez-Garcia et al.
PLOS ONE (2012)
Contrasting Life Strategies of Viruses that Infect Photo- and Heterotrophic Bacteria, as Revealed by Viral Tagging
Li Deng et al.
MBIO (2012)
Easyfig: a genome comparison visualizer
Mitchell J. Sullivan et al.
BIOINFORMATICS (2011)
ProtTest 3: fast selection of best-fit models of protein evolution
Diego Darriba et al.
BIOINFORMATICS (2011)
Using CRISPRs as a metagenomic tool to identify microbial hosts of a diffuse flow hydrothermal vent viral assemblage
Rika E. Anderson et al.
FEMS MICROBIOLOGY ECOLOGY (2011)
Phylogenomic Evidence for the Presence of a Flagellum and cbb3 Oxidase in the Free-Living Mitochondrial Ancestor
Davide Sassera et al.
MOLECULAR BIOLOGY AND EVOLUTION (2011)
Statistical structure of host-phage interactions
Cesar O. Flores et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean
Brandon K. Swan et al.
SCIENCE (2011)
Single-Cell Genomics Reveals Organismal Interactions in Uncultivated Marine Protists
Hwan Su Yoon et al.
SCIENCE (2011)
Probing Individual Environmental Bacteria for Viruses by Using Microfluidic Digital PCR
Arbel D. Tadmor et al.
SCIENCE (2011)
Draft genome sequence of strain HIMB100, a cultured representative of the SAR116 clade of marine Alphaproteobacteria
Jana Grote et al.
STANDARDS IN GENOMIC SCIENCES (2011)
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan et al.
BIOINFORMATICS (2010)
Prodigal: prokaryotic gene recognition and translation initiation site identification
Doug Hyatt et al.
BMC BIOINFORMATICS (2010)
Complete Genome Sequence of Candidatus Puniceispirillum marinum IMCC1322, a Representative of the SAR116 Clade in the Alphaproteobacteria
Hyun-Myung Oh et al.
JOURNAL OF BACTERIOLOGY (2010)
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
Stephane Guindon et al.
SYSTEMATIC BIOLOGY (2010)
Phylogenetic Analysis Indicates Evolutionary Diversity and Environmental Segregation of Marine Podovirus DNA Polymerase Gene Sequences
Jessica M. Labonte et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)
The genome and structural proteome of an ocean siphovirus: a new window into the cyanobacterial 'mobilome'
Matthew B. Sullivan et al.
ENVIRONMENTAL MICROBIOLOGY (2009)
Assembling the Marine Metagenome, One Cell at a Time
Tanja Woyke et al.
PLOS ONE (2009)
Shifting the genomic gold standard for the prokaryotic species definition
Michael Richter et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
Ben Langmead et al.
GENOME BIOLOGY (2009)
Prophinder: a computational tool for prophage prediction in prokaryotic genomes
Gipsi Lima-Mendez et al.
BIOINFORMATICS (2008)
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
Daniel R. Zerbino et al.
GENOME RESEARCH (2008)
Prophages in marine bacteria: dangerous molecular time bombs or the key to survival in the seas?
John H. Paul
ISME JOURNAL (2008)
Metagenomic Analysis of Lysogeny in Tampa Bay: Implications for Prophage Gene Expression
Lauren McDaniel et al.
PLOS ONE (2008)
Comparative genomics of the mycobacteriophages: insights into bacteriophage evolution
Graham F. Hatfull et al.
RESEARCH IN MICROBIOLOGY (2008)
A Rapid Bootstrap Algorithm for the RAxML Web Servers
Alexandros Stamatakis et al.
SYSTEMATIC BIOLOGY (2008)
Marine viruses - major players in the global ecosystem
Curtis A. Suttle
NATURE REVIEWS MICROBIOLOGY (2007)
Flow cytometric detection and enumeration of DNA and RNA viruses infecting marine eukaryotic microalgae
Yuji Tomaru et al.
JOURNAL OF OCEANOGRAPHY (2007)
Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments
Gerard Talavera et al.
SYSTEMATIC BIOLOGY (2007)
Viruses of the Archaea: a unifying view
David Prangishvili et al.
NATURE REVIEWS MICROBIOLOGY (2006)
Phage_Finder:: Automated identification and classification of prophage regions in complete bacterial genome sequences
Derrick E. Fouts
NUCLEIC ACIDS RESEARCH (2006)
Interpolated variable order motifs for identification of horizontally acquired DNA:: revisiting the Salmonella pathogenicity islands
Georgios S. Vernikos et al.
BIOINFORMATICS (2006)
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
Weizhong Li et al.
BIOINFORMATICS (2006)
Sequencing genomes from single cells by polymerase cloning
Kun Zhang et al.
NATURE BIOTECHNOLOGY (2006)
Marine T4-type bacteriophages, a ubiquitous component of the dark matter of the biosphere
J Filée et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Genomic DNA amplification from a single bacterium
A Raghunathan et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2005)
Three Prochlorococcus cyanophage genomes:: Signature features and ecological interpretations
MB Sullivan et al.
PLOS BIOLOGY (2005)
MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
NUCLEIC ACIDS RESEARCH (2004)
Cyanophages infecting the oceanic cyanobacterium Prochlorococcus
MB Sullivan et al.
NATURE (2003)
Prophage genomics
C Canchaya et al.
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2003)
The uncultured microbial majority
MS Rappe et al.
ANNUAL REVIEW OF MICROBIOLOGY (2003)
Seasonal variation in lysogeny as depicted by prophage induction in Tampa Bay, Florida
SJ Williamson et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2002)
Cultivation of the ubiquitous SAR11 marine bacterioplankton clade
MS Rappé et al.
NATURE (2002)
Plankton blooms -: Lysogeny in marine Synechococcus
L McDaniel et al.
NATURE (2002)
Phage genomics:: Small is beautiful
H Brüssow et al.
CELL (2002)
Virioplankton: Viruses in aquatic ecosystems
KE Wommack et al.
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2000)
Share Paper
