4.6 Article

Genomic Encyclopedia of Type Strains of the Genus Bifidobacterium

Related references

Note: Only part of the references are listed.
Review Agriculture, Multidisciplinary

Bifidobacteria and humans: our special friends, from ecological to genomics perspectives

Marco Ventura et al.

JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE (2014)

Article Multidisciplinary Sciences

T-cell activation by transitory neo-antigens derived from distinct microbial pathways

Alexandra J. Corbett et al.

NATURE (2014)

Article Biochemistry & Molecular Biology

The carbohydrate-active enzymes database (CAZy) in 2013

Vincent Lombard et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Biochemical Research Methods

BlastGraph: a comparative genomics tool based on BLAST and graph algorithms

Yanbo Ye et al.

BIOINFORMATICS (2013)

Article Multidisciplinary Sciences

Assessing the Fecal Microbiota: An Optimized Ion Torrent 16S rRNA Gene-Based Analysis Protocol

Christian Milani et al.

PLOS ONE (2013)

Article Multidisciplinary Sciences

PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes

Nicola Segata et al.

NATURE COMMUNICATIONS (2013)

Review Cell Biology

CRISPR-Cas systems and RNA-guided interference

Rodolphe Barrangou

WILEY INTERDISCIPLINARY REVIEWS-RNA (2013)

Article Biochemical Research Methods

PGAP: pan-genomes analysis pipeline

Yongbing Zhao et al.

BIOINFORMATICS (2012)

Article Multidisciplinary Sciences

Diversity of Bifidobacteria within the Infant Gut Microbiota

Francesca Turroni et al.

PLOS ONE (2012)

Article Multidisciplinary Sciences

Bifidobacterium asteroides PRL2011 Genome Analysis Reveals Clues for Colonization of the Insect Gut

Francesca Bottacini et al.

PLOS ONE (2012)

Review Biochemistry & Molecular Biology

Host-microbe interactions that facilitate gut colonization by commensal bifidobacteria

Marco Ventura et al.

TRENDS IN MICROBIOLOGY (2012)

Article Genetics & Heredity

Selection-Driven Gene Loss in Bacteria

Sanna Koskiniemi et al.

PLOS GENETICS (2012)

Article Biotechnology & Applied Microbiology

Novel Probiotic Bifidobacterium bifidum CECT 7366 Strain Active against the Pathogenic Bacterium Helicobacter pylori

E. Chenoll et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)

Review Biochemistry & Molecular Biology

The cytochrome bd respiratory oxygen reductases

Vitaliy B. Borisov et al.

BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS (2011)

Article Microbiology

Bifidobacterium actinocoloniiforme sp nov and Bifidobacterium bohemicum sp nov., from the bumblebee digestive tract

J. Killer et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2011)

Article Multidisciplinary Sciences

Enterotypes of the human gut microbiome

Manimozhiyan Arumugam et al.

NATURE (2011)

Review Microbiology

Evolution and classification of the CRISPR-Cas systems

Kira S. Makarova et al.

NATURE REVIEWS MICROBIOLOGY (2011)

Article Multidisciplinary Sciences

Genetic evidence for a protective role of the peritrophic matrix against intestinal bacterial infection in Drosophila melanogaster

Takayuki Kuraishi et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Gastroenterology & Hepatology

Bifidobacterium bifidum reduces apoptosis in the intestinal epithelium in necrotizing enterocolitis

Ludmila Khailova et al.

AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY (2010)

Article Biochemical Research Methods

Prodigal: prokaryotic gene recognition and translation initiation site identification

Doug Hyatt et al.

BMC BIOINFORMATICS (2010)

Article Agriculture, Dairy & Animal Science

Bifidobacterium bifidum BF-1 suppresses Helicobacter pylori-induced genes in human epithelial cells

Y. Shirasawa et al.

JOURNAL OF DAIRY SCIENCE (2010)

Review Microbiology

The ecological coherence of high bacterial taxonomic ranks

Laurent Philippot et al.

NATURE REVIEWS MICROBIOLOGY (2010)

Article Biochemistry & Molecular Biology

REBASE-a database for DNA restriction and modification: enzymes, genes and genomes

Richard J. Roberts et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Genetics & Heredity

Standard operating procedure for computing pangenome trees

Lars Snipen et al.

STANDARDS IN GENOMIC SCIENCES (2010)

Article Biotechnology & Applied Microbiology

Exploring the Diversity of the Bifidobacterial Population in the Human Intestinal Tract

Francesca Turroni et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)

Article Biotechnology & Applied Microbiology

Comparative Analyses of Prophage-Like Elements Present in Bifidobacterial Genomes

Marco Ventura et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)

Review Microbiology

Genome-scale analyses of health-promoting bacteria: probiogenomics

Marco Ventura et al.

NATURE REVIEWS MICROBIOLOGY (2009)

Article Biochemical Research Methods

annot8r: GO, EC and KEGG annotation of EST datasets

Ralf Schmid et al.

BMC BIOINFORMATICS (2008)

Article Multidisciplinary Sciences

Comparative Bacterial Proteomics: Analysis of the Core Genome Concept

Stephen J. Callister et al.

PLOS ONE (2008)

Article Biochemical Research Methods

Clustal W and clustal X version 2.0

M. A. Larkin et al.

BIOINFORMATICS (2007)

Article Biochemistry & Molecular Biology

CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats

Ibtissem Grissa et al.

NUCLEIC ACIDS RESEARCH (2007)

Article Multidisciplinary Sciences

CRISPR provides acquired resistance against viruses in prokaryotes

Rodolphe Barrangou et al.

SCIENCE (2007)

Review Microbiology

Evolutionary genomics of lactic acid bacteria

Kira S. Makarova et al.

JOURNAL OF BACTERIOLOGY (2007)

Article Biotechnology & Applied Microbiology

DarkHorse: a method for genome-wide prediction of horizontal gene transfer

Sheila Podell et al.

GENOME BIOLOGY (2007)

Article Microbiology

Analysis of bifidobacterial evolution using a multilocus approach

Marco Ventura et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2006)

Article Multidisciplinary Sciences

Comparative genomics of the lactic acid bacteria

K. Makarova et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Biochemical Research Methods

Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models

Stephan Waack et al.

BMC BIOINFORMATICS (2006)

Article Multidisciplinary Sciences

Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae:: Implications for the microbial pan-genome

H Tettelin et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Biochemical Research Methods

The COG database: an updated version includes eukaryotes

RL Tatusov et al.

BMC BIOINFORMATICS (2003)

Review Biochemistry & Molecular Biology

Microbial isoprenoid biosynthesis and human γδ T cell activation

M Eberl et al.

FEBS LETTERS (2003)

Article Biochemistry & Molecular Biology

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

K Katoh et al.

NUCLEIC ACIDS RESEARCH (2002)

Article Biochemistry & Molecular Biology

An efficient algorithm for large-scale detection of protein families

AJ Enright et al.

NUCLEIC ACIDS RESEARCH (2002)

Article Multidisciplinary Sciences

Cooperation and competition in the evolution of ATP-producing pathways

T Pfeiffer et al.

SCIENCE (2001)

Article Biochemical Research Methods

Artemis: sequence visualization and annotation

K Rutherford et al.

BIOINFORMATICS (2000)