4.4 Article Proceedings Paper

Infrared spectral imaging of lymph nodes: Strategies for analysis and artifact reduction

Journal

VIBRATIONAL SPECTROSCOPY
Volume 38, Issue 1-2, Pages 115-119

Publisher

ELSEVIER SCIENCE BV
DOI: 10.1016/j.vibspec.2005.03.009

Keywords

cluster analysis; IR spectral imaging; FT-IR micro-spectroscopy; lymph nodes; dispersion artifact

Funding

  1. NCI NIH HHS [R01 CA111330-02, R01 CA111330, R01 CA090346] Funding Source: Medline
  2. NCRR NIH HHS [G12 RR003037] Funding Source: Medline
  3. NIGMS NIH HHS [S06 GM060654] Funding Source: Medline

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In this contribution, we discuss state-of-the-art methodology for the collection and analysis of hyperspectral images of tissue that will become useful in complementing classical histopathology. In particular, we discuss sampling strategies, data collection methods, and computational approaches to produce pseudo-color maps of large tissue sections of lymph nodes, up to about 100 mm 2 in size. The latter efforts include methods to reduce the presence of dispersion artifacts in IR transfection micro-spectra which can greatly impact the statistical analyzes performed on the data, such as hierarchical cluster analysis and principal components analysis. (c) 2005 Elsevier B.V. All rights reserved.

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