4.6 Article

The Genome of the Alga-Associated Marine Flavobacterium Formosa agariphila KMM 3901T Reveals a Broad Potential for Degradation of Algal Polysaccharides

Related references

Note: Only part of the references are listed.
Article Ecology

Ecology of marine Bacteroidetes: a comparative genomics approach

Beatriz Fernandez-Gomez et al.

ISME JOURNAL (2013)

Article Chemistry, Applied

Sulfated β-D-mannan from green seaweed Codium vermilara

Paula Virginia Fernandez et al.

CARBOHYDRATE POLYMERS (2012)

Article Microbiology

Genomic content of uncultured Bacteroidetes from contrasting oceanic provinces in the North Atlantic Ocean

Paola R. Gomez-Pereira et al.

ENVIRONMENTAL MICROBIOLOGY (2012)

Article Biochemistry & Molecular Biology

Prioritization of a plant polysaccharide over a mucus carbohydrate is enforced by a Bacteroides hybrid two-component system

Jonathan B. Lynch et al.

MOLECULAR MICROBIOLOGY (2012)

Article Biochemistry & Molecular Biology

InterPro in 2011: new developments in the family and domain prediction database

Sarah Hunter et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Biochemistry & Molecular Biology

NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy

Kim D. Pruitt et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Biochemistry & Molecular Biology

MEROPS: the database of proteolytic enzymes, their substrates and inhibitors

Neil D. Rawlings et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Multidisciplinary Sciences

Bacteria of the human gut microbiome catabolize red seaweed glycans with carbohydrate-active enzyme updates from extrinsic microbes

Jan-Hendrik Hehemann et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Biotechnology & Applied Microbiology

Genomics of the Proteorhodopsin-Containing Marine Flavobacterium Dokdonia sp Strain MED134

Jose M. Gonzalez et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)

Review Biochemistry & Molecular Biology

TonB or not TonB: is that the question?

Karla D. Krewulak et al.

BIOCHEMISTRY AND CELL BIOLOGY (2011)

Article Integrative & Complementary Medicine

Impact of Intensive Land-Based Fish Culture in Qingdao, China, on the Bacterial Communities in Surrounding Marine Waters and Sediments

Qiufen Li et al.

EVIDENCE-BASED COMPLEMENTARY AND ALTERNATIVE MEDICINE (2011)

Article Microbiology

Formosa spongicola sp. nov., isolated from the marine sponge Hymeniacidon flavia

Byoung-Jun Yoon et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2011)

Article Chemistry, Multidisciplinary

Glycoside Cleavage by a New Mechanism in Unsaturated Glucuronyl Hydrolases

Seino A. K. Jongkees et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2011)

Article Biochemistry & Molecular Biology

Recognition and Degradation of Plant Cell Wall Polysaccharides by Two Human Gut Symbionts

Eric C. Martens et al.

PLOS BIOLOGY (2011)

Review Microbiology

Environmental and gut Bacteroidetes: the food connection

Francois Thomas et al.

FRONTIERS IN MICROBIOLOGY (2011)

Review Microbiology

TonB-Dependent Transporters: Regulation, Structure, and Function

Nicholas Noinaj et al.

ANNUAL REVIEW OF MICROBIOLOGY, VOL 64, 2010 (2010)

Article Biochemistry & Molecular Biology

Isolation and characterization of two types of β-1,3-glucanases from the common sea hare Aplysia kurodai

Yuya Kumagai et al.

COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY (2010)

Article Multidisciplinary Sciences

Transfer of carbohydrate-active enzymes from marine bacteria to Japanese gut microbiota

Jan-Hendrik Hehemann et al.

NATURE (2010)

Review Biochemistry & Molecular Biology

Complex Glycan Catabolism by the Human Gut Microbiota: The Bacteroidetes Sus-like Paradigm

Eric C. Martens et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2009)

Article Biochemistry & Molecular Biology

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

Brandi L. Cantarel et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Biochemistry & Molecular Biology

Sulfated mannans from the red seaweed Nemalion helminthoides of the South Atlantic

Mercedes Perez Recalde et al.

PHYTOCHEMISTRY (2009)

Review Biochemistry & Molecular Biology

Glycosyltransferases: Structures, functions, and mechanisms

L. L. Lairson et al.

ANNUAL REVIEW OF BIOCHEMISTRY (2008)

Article Biotechnology & Applied Microbiology

Attached bacterial populations shared by four species of aquatic angiosperms

Byron C. Crump et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2008)

Review Biotechnology & Applied Microbiology

An overview of mannan structure and mannan-degrading enzyme systems

L. R. S. Moreira et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2008)

Article Biochemical Research Methods

JCoast -: A biologist-centric software tool for data mining and comparison of prokaryotic (meta) genomes

Michael Richter et al.

BMC BIOINFORMATICS (2008)

Article Biotechnology & Applied Microbiology

The RAST server: Rapid annotations using subsystems technology

Ramy K. Aziz et al.

BMC GENOMICS (2008)

Article Microbiology

Phylogenetic analysis of bacteria associated with Laminaria saccharina

Tim Staufenberger et al.

FEMS MICROBIOLOGY ECOLOGY (2008)

Article Multidisciplinary Sciences

Genome analysis of the proteorhodopsin-containing marine bacterium Polaribacter sp MED152 (Flavobacteria)

Jose M. Gonzalez et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Review Biochemistry & Molecular Biology

New substrates for TonB-dependent transport: do we only see the 'tip of the iceberg'?

Kristine Schauer et al.

TRENDS IN BIOCHEMICAL SCIENCES (2008)

Article Multidisciplinary Sciences

Light stimulates growth of proteorhodopsin-containing marine Flavobacteria

Laura Gomez-Consarnau et al.

NATURE (2007)

Article Biochemical Research Methods

RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

Alexandros Stamatakis

BIOINFORMATICS (2006)

Article Multidisciplinary Sciences

A hybrid two-component system protein of a prominent human gut symbiont couples glycan sensing in vivo to carbohydrate metabolism

Erica D. Sonnenburg et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Microbiology

Formosa agariphila sp nov., a budding bacterium of the family Flavobacteriaceae isolated from marine environments, and emended description of the genus Formosa

OI Nedashkovskaya et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2006)

Article Microbiology

Pibocella ponti gen. nov., sp nov., a novel marine bacterium of the family Flavobacteriaceae isolated from the green alga Acrosiphonia sonderi

OI Nedashkovskaya et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2005)

Article Microbiology

Formosa algae gen. nov., sp nov., a novel member of the family Flavobacteriaceae

EP Ivanova et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2004)

Article Biochemistry & Molecular Biology

ARB:: a software environment for sequence data

W Ludwig et al.

NUCLEIC ACIDS RESEARCH (2004)

Article Microbiology

Application of tetranucleotide frequencies for the assignment of genomic fragments

H Teeling et al.

ENVIRONMENTAL MICROBIOLOGY (2004)

Article Microbiology

Algibacter lectus gen. nov., sp nov., a novel member of the family Flavobacteriaceae isolated from green algae

OI Nedashkovskaya et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2004)

Review Plant Sciences

Why are there so many carbohydrate-active enzyme-related genes in plants?

PM Coutinho et al.

TRENDS IN PLANT SCIENCE (2003)

Article Biochemistry & Molecular Biology

An evolving hierarchical family classification for glycosyltransferases

PM Coutinho et al.

JOURNAL OF MOLECULAR BIOLOGY (2003)

Article Biochemistry & Molecular Biology

GenDB -: an open source genome annotation system for prokaryote genomes

F Meyer et al.

NUCLEIC ACIDS RESEARCH (2003)

Article Multidisciplinary Sciences

A genomic view of the human-Bacteroides thetaiotaomicron symbiosis

J Xu et al.

SCIENCE (2003)

Article Microbiology

Mesonia algae gen. nov., sp nov., a novel marine bacterium of the family Flavobacteriaceae isolated from the green alga Acrosiphonia sonderi (Kutz) Kornm

OI Nedashkovskaya et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2003)

Article Biotechnology & Applied Microbiology

Partitioning of bacterial communities between seawater and healthy, black band diseased, and dead coral surfaces

J Frias-Lopez et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2002)

Review Biochemistry & Molecular Biology

The prolyl oligopeptidase family

L Polgár

CELLULAR AND MOLECULAR LIFE SCIENCES (2002)

Article Ecology

Diversity and distribution of coral-associated bacteria

F Rohwer et al.

MARINE ECOLOGY PROGRESS SERIES (2002)

Article Biochemistry & Molecular Biology

Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes

A Krogh et al.

JOURNAL OF MOLECULAR BIOLOGY (2001)

Article Biotechnology & Applied Microbiology

Culturability and in situ abundance of pelagic bacteria from the North Sea

H Eilers et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2000)