4.6 Article

Community Structure Analysis of Methanogens Associated with Rumen Protozoa Reveals Bias in Universal Archaeal Primers

Journal

APPLIED AND ENVIRONMENTAL MICROBIOLOGY
Volume 78, Issue 11, Pages 4051-4056

Publisher

AMER SOC MICROBIOLOGY
DOI: 10.1128/AEM.07994-11

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Funding

  1. Norwegian-Canadian Holos project

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The diversity of protozoan-associated methanogens in cattle was investigated using five universal archaeal small-subunit (SSU) rRNA gene primer sets. Methanobrevibacter spp. and rumen cluster C (distantly related to Thermoplasma spp.) were predominant. Significant differences in species composition among libraries indicate that some primers used previously to characterize rumen methanogens exhibit biased amplification.

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