Journal
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
Volume 60, Issue 2, Pages 207-213Publisher
WILEY
DOI: 10.1002/prot.20559
Keywords
ZDOCK; RDOCK; CAPRI; protein docking; scoring function; blind test
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We present an evaluation of the results of our ZDOCK and RDOCK algorithms in Rounds 3, 4, and 5 of the protein docking challenge CAPRI. ZDOCK is a Fast Fourier Transform (FFT)based, initial-stage rigid-body docking algorithm, and RDOCK is an energy minimization algorithm for refining and reranking ZDOCK results. Of the 9 targets for which we submitted predictions, we attained at least acceptable accuracy for 7, at least medium accuracy for 6, and high accuracy for 3. These results are evidence that ZDOCK in combination with RDOCK is capable of making-accurate predictions on a diverse set of protein complexes. (c) 2005 Wiley-Liss, Inc.
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