4.7 Article

PsN-Toolkit - A collection of computer intensive statistical methods for non-linear mixed effect modeling using NONMEM

Journal

COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE
Volume 79, Issue 3, Pages 241-257

Publisher

ELSEVIER IRELAND LTD
DOI: 10.1016/j.cmpb.2005.04.005

Keywords

pharmacokinetics; pharmacodynamics; NONMEM; Bootstrap; Jackknife; Log-likelihood Profiling; Case-Deletion Diagnostics; Stepwise Covariate Model building; computer intensive methods; Perl

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PsN-Toolkit is a collection of statistical tools for pharmacometric data analysis using the non-linear mixed effect modeling software NONMEM. The toolkit is object oriented and written in the programming language Pert using the programming Library Pert-speaks -NONMEM (PsN). Five methods: the Bootstrap, the Jackknife, Log-likelihood Profiling, Case-deletion Diagnostics and Stepwise Covariate Model building are included as separate classes and may be used in user-written Pert scripts or through stand-alone command line applications. The tools are designed with the ability to cooperate and with an emphasis on common structures for workflow and result handling. Parallel execution of independent tool sections is supported on shared memory multiprocessor (SMP) computers, Mosix/openMosix clusters and distributed computing environments following the NorduGrid standard. In conclusion, PsN-Toolkit makes it easier to use the Bootstrap, the Jackknife, Log-likelihood Profiling, Case-deletion Diagnostics and Stepwise Covariate Model building in pharmacometric data analysis. (c) 2005 Elsevier Ireland Ltd. All rights reserved.

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