Journal
BIOINFORMATICS
Volume 22, Issue 6, Pages 768-770Publisher
OXFORD UNIV PRESS
DOI: 10.1093/bioinformatics/btk051
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Funding
- NCI NIH HHS [5R01CM51929-11] Funding Source: Medline
- NIGMS NIH HHS [R01 GM051929, 5R01GM51929-11] Funding Source: Medline
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We present a Markov chain Monte Carlo coalescent genealogy sampler, LAMARC 2.0, which estimates population genetic parameters from genetic data. LAMARC can co-estimate subpopulation Theta = 4N(e)mu, immigration rates, subpopulation exponential growth rates and overall recombination rate, or a user-specified subset of these parameters. It can perform either maximum-likelihood or Bayesian analysis, and accomodates nucleotide sequence, SNP, microsatellite or elecrophoretic data, with resolved or unresolved haplotypes. It is available as portable source code and executables for all three major platforms.
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