4.7 Article Proceedings Paper

Local multidimensional scaling

Journal

NEURAL NETWORKS
Volume 19, Issue 6-7, Pages 889-899

Publisher

PERGAMON-ELSEVIER SCIENCE LTD
DOI: 10.1016/j.neunet.2006.05.014

Keywords

information visualization; manifold extraction; multi-dimensional scaling (MDS); nonlinear dimensionality reduction; non-linear projection; gene expression

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In a visualization task, every nonlinear projection method needs to make a compromise between trustworthiness and continuity. In a trustworthy projection the visualized proximities hold in the original data as well, whereas a continuous projection visualizes all proximities of the original data. We show experimentally that one of the multidimensional scaling methods, curvilinear components analysis, is good at maximizing trustworthiness. We then extend it to focus on local proximities both in the input and output space, and to explicitly make a user-tunable parameterized compromise between trustworthiness and continuity. The new method compares favorably to alternative nonlinear projection methods. (c) 2006 Elsevier Ltd. All rights reserved.

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