4.3 Article

A nomenclature and data model to describe NMR experiments

Journal

JOURNAL OF BIOMOLECULAR NMR
Volume 36, Issue 3, Pages 147-155

Publisher

SPRINGER
DOI: 10.1007/s10858-006-9076-z

Keywords

CCPN; data model; data standard; experiment nomenclature; experiment pathway; NMR

Funding

  1. Biotechnology and Biological Sciences Research Council [B20259, BB/E005071/1] Funding Source: Medline
  2. BBSRC [BB/E005071/1] Funding Source: UKRI
  3. Biotechnology and Biological Sciences Research Council [BB/E005071/1, B20259] Funding Source: researchfish

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Despite ongoing efforts in organising NMR information, there is no consistent and well-described generic standard for naming NMR experiments. The main reason for the absence of a universal naming system is that the information content of the coherence pathways is difficult to describe in full detail. We propose a system that describes the common and generic elements of the coherence pathways produced by pulse sequences. The system itself is formalised by an 'NMR experiment protocol' model, which is described in the Universal Modelling Language (UML) as part of the CCPN data model. Furthermore, normalized experiment names can be derived from this proposed model. We hope this article will stimulate discussion to organise the wealth of NMR experiments, and that by bringing this discussion into the public domain we can improve and expand our proposed system to include as much information and as many NMR experiments as possible.

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