Journal
BIOINFORMATICS
Volume 23, Issue 8, Pages 1026-1028Publisher
OXFORD UNIV PRESS
DOI: 10.1093/bioinformatics/btm039
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Gepard provides a user-friendly, interactive application for the quick creation of dotplots. It utilizes suffix arrays to reduce the time complexity of dotplot calculation to Theta(m*log n). A client-server mode, which is a novel feature for dotplot creation software, allows the user to calculate dotplots and color them by functional annotation without any prior downloading of sequence or annotation data.
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