4.2 Article Proceedings Paper

Schistosoma mansoni genome:: Closing in on a final gene set

Journal

EXPERIMENTAL PARASITOLOGY
Volume 117, Issue 3, Pages 225-228

Publisher

ACADEMIC PRESS INC ELSEVIER SCIENCE
DOI: 10.1016/j.exppara.2007.06.005

Keywords

Schistosoma mansoni; genome; gene finding; annotation

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Funding

  1. NIAID NIH HHS [U01 AI048828, AI48828] Funding Source: Medline
  2. Wellcome Trust [13557021] Funding Source: Medline

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The Schistosoma mansoni genome sequencing consortium has recently released the latest versions of the genome assembly as well as an automated preliminary gene structure annotation. The combined datasets constitute a vast resource for researchers to exploit in a variety of post-genomic studies with an emphasis of transcriptomic and proteomic tools. Here we present an innovative method used for combining diverse sources of evidence including ab initio gene predictions, protein and transcript sequence homologies, and cross-genome sequence homologies between S. mansoni and Schistosoma japonicum to define a comprehensive list of protein-coding genes. (C) 2007 Elsevier Inc. All rights reserved.

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