4.4 Review

Chasing bacterial chassis for metabolic engineering: a perspective review from classical to non-traditional microorganisms

Related references

Note: Only part of the references are listed.
Review Biotechnology & Applied Microbiology

Streptomyces spp. in the biocatalysis toolbox

Jelena Spasic et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2018)

Review Biotechnology & Applied Microbiology

Potential and limitations of Klebsiella pneumoniae as a microbial cell factory utilizing glycerol as the carbon source

Vinod Kumar et al.

BIOTECHNOLOGY ADVANCES (2018)

Article Biotechnology & Applied Microbiology

Application of adaptive laboratory evolution to overcome a flux limitation in an Escherichia coli production strain

Kento Tokuyama et al.

BIOTECHNOLOGY AND BIOENGINEERING (2018)

Review Biochemical Research Methods

Rapidly moving new bacteria to model-organism status

Hualan Liu et al.

CURRENT OPINION IN BIOTECHNOLOGY (2018)

Review Biochemical Research Methods

Reinforcing carbon fixation: CO2 reduction replacing and supporting carboxylation

Charles A. R. Cotton et al.

CURRENT OPINION IN BIOTECHNOLOGY (2018)

Review Microbiology

Omics and multi-omics approaches to study the biosynthesis of secondary metabolites in microorganisms

Emilia Palazzotto et al.

CURRENT OPINION IN MICROBIOLOGY (2018)

Review Biotechnology & Applied Microbiology

Escherichia coli as a host for metabolic engineering

Sammy Pontrelli et al.

METABOLIC ENGINEERING (2018)

Review Biotechnology & Applied Microbiology

Metabolic engineering tools in model cyanobacteria

Austin L. Carroll et al.

METABOLIC ENGINEERING (2018)

Review Biotechnology & Applied Microbiology

Pseudomonas putida as a functional chassis for industrial biocatalysis: From native biochemistry to trans-metabolism

Pablo I. Nikel et al.

METABOLIC ENGINEERING (2018)

Article Biotechnology & Applied Microbiology

Metabolic engineering of Pseudomonas taiwanensis VLB120 with minimal genomic modifications for high-yield phenol production

Benedikt Wynands et al.

METABOLIC ENGINEERING (2018)

Article Biotechnology & Applied Microbiology

RetroPath2.0: A retrosynthesis workflow for metabolic engineers

Baudoin Delepine et al.

METABOLIC ENGINEERING (2018)

Review Biotechnology & Applied Microbiology

Advances and prospects of Bacillus subtilis cellular factories: From rational design to industrial applications

Yang Gu et al.

METABOLIC ENGINEERING (2018)

Article Biotechnology & Applied Microbiology

Engineered promoters enable constant gene expression at any copy number in bacteria

Thomas H. Segall-Shapiro et al.

NATURE BIOTECHNOLOGY (2018)

Review Biotechnology & Applied Microbiology

Solvent Tolerance in Bacteria: Fulfilling the Promise of the Biotech Era?

Hadiastri Kusumawardhani et al.

TRENDS IN BIOTECHNOLOGY (2018)

Article Multidisciplinary Sciences

Diverse genetic error modes constrain large-scale bio-based production

Peter Rugbjerg et al.

NATURE COMMUNICATIONS (2018)

Review Microbiology

Rewriting the Metabolic Blueprint: Advances in Pathway Diversification in Microorganisms

Gazi Sakir Hossain et al.

FRONTIERS IN MICROBIOLOGY (2018)

Review Microbiology

New Insights on Steroid Biotechnology

Lorena Fernandez-Cabezon et al.

FRONTIERS IN MICROBIOLOGY (2018)

Article Multidisciplinary Sciences

Mutant phenotypes for thousands of bacterial genes of unknown function

Morgan N. Price et al.

NATURE (2018)

Article Chemistry, Multidisciplinary

Directed Evolution: Bringing New Chemistry to Life

Frances H. Arnold

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2018)

Article Biotechnology & Applied Microbiology

Genome-wide identification of tolerance mechanisms toward p-coumaric acid in Pseudomonas putida

Patricia Calero et al.

BIOTECHNOLOGY AND BIOENGINEERING (2018)

Review Biotechnology & Applied Microbiology

Tunable recombinant protein expression in E. coli: promoter systems and genetic constraints

Lukas Marschall et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2017)

Article Biotechnology & Applied Microbiology

Enhanced extracellular production of L-asparaginase from Bacillus subtilis 168 by B-subtilis WB600 through a combined strategy

Yue Feng et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2017)

Article Biotechnology & Applied Microbiology

Biotechnological production of aromatic compounds of the extended shikimate pathway from renewable biomass

Jin-Ho Lee et al.

JOURNAL OF BIOTECHNOLOGY (2017)

Article Biotechnology & Applied Microbiology

Novel T7-like expression systems used for Halomonas

Han Zhao et al.

METABOLIC ENGINEERING (2017)

Article Biotechnology & Applied Microbiology

Increased production of L-serine in Escherichia coil through Adaptive Laboratory Evolution

Hemanshu Mundhada et al.

METABOLIC ENGINEERING (2017)

Article Biotechnology & Applied Microbiology

Metabolism of the fast-growing bacterium Vibrio natriegens elucidated by 13C metabolic flux analysis

Christopher P. Long et al.

METABOLIC ENGINEERING (2017)

Article Biotechnology & Applied Microbiology

Designer rhamnolipids by reduction of congener diversity: production and characterization

Till Tiso et al.

MICROBIAL CELL FACTORIES (2017)

Article Biotechnology & Applied Microbiology

Engineering Halomonas species TD01 for enhanced polyhydroxyalkanoates synthesis via CRISPRi

Wei Tao et al.

MICROBIAL CELL FACTORIES (2017)

Article Biotechnology & Applied Microbiology

Generation of a platform strain for ionic liquid tolerance using adaptive laboratory evolution

Elsayed T. Mohamed et al.

MICROBIAL CELL FACTORIES (2017)

Review Biotechnology & Applied Microbiology

Microbial synthesis of medium-chain chemicals from renewables

Stephen Sarria et al.

NATURE BIOTECHNOLOGY (2017)

Article Multidisciplinary Sciences

Redesigning metabolism based on orthogonality principles

Aditya Vikram Pandit et al.

NATURE COMMUNICATIONS (2017)

Article Biochemical Research Methods

Multiplex Genome Editing by Natural Transformation (MuGENT) for Synthetic Biology in Vibrio natriegens

Triana N. Dalia et al.

ACS SYNTHETIC BIOLOGY (2017)

Article Biochemical Research Methods

Engineered Assimilation of Exogenous and Endogenous Formate in Escherichia coli

Oren Yishai et al.

ACS SYNTHETIC BIOLOGY (2017)

Article Biochemistry & Molecular Biology

Construction and Analysis of Two Genome-Scale Deletion Libraries for Bacillus subtilis

Byoung-Mo Koo et al.

CELL SYSTEMS (2017)

Review Biotechnology & Applied Microbiology

Metabolic engineering of Bacillus subtilis fueled by systems biology: Recent advances and future directions

Yanfeng Liu et al.

BIOTECHNOLOGY ADVANCES (2017)

Review Biochemistry & Molecular Biology

Holistic bioengineering: rewiring central metabolism for enhanced bioproduction

Selcuk Aslan et al.

BIOCHEMICAL JOURNAL (2017)

Review Biochemical Research Methods

Molecular tools and emerging strategies for deep genetic/genomic refactoring of Pseudomonas

Esteban Martinez-Garcia et al.

CURRENT OPINION IN BIOTECHNOLOGY (2017)

Article Biotechnology & Applied Microbiology

High Substrate Uptake Rates Empower Vibrio natriegens as Production Host for Industrial Biotechnology

Eugenia Hoffart et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2017)

Review Biotechnology & Applied Microbiology

Bioremediation 3.0: Engineering pollutant-removing bacteria in the times of systemic biology

Pavel Dvorak et al.

BIOTECHNOLOGY ADVANCES (2017)

Review Biotechnology & Applied Microbiology

Engineering bacteria for enhanced polyhydroxyalkanoates (PHA) biosynthesis

Guo-Qiang Chen et al.

SYNTHETIC AND SYSTEMS BIOTECHNOLOGY (2017)

Article Biotechnology & Applied Microbiology

Conversion of lignin model compounds by Pseudomonas putida KT2440 and isolates from compost

Krithika Ravi et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2017)

Review Biochemistry & Molecular Biology

Synthetic metabolism: metabolic engineering meets enzyme design

Tobias J. Erb et al.

CURRENT OPINION IN CHEMICAL BIOLOGY (2017)

Article Biotechnology & Applied Microbiology

Deciphering characteristics of the designer cellulosome from Bacillus subtilis WB800N via enzymatic analysis

Chia-Chi Lin et al.

BIOCHEMICAL ENGINEERING JOURNAL (2017)

Review Biochemical Research Methods

Minimal genome: Worthwhile or worthless efforts toward being smaller?

Donghui Choe et al.

BIOTECHNOLOGY JOURNAL (2016)

Review Microbiology

A holistic view of polyhydroxyalkanoate metabolism in Pseudomonas putida

Auxiliadora Prieto et al.

ENVIRONMENTAL MICROBIOLOGY (2016)

Article Biochemistry & Molecular Biology

Enhanced annotations and features for comparing thousands of Pseudomonas genomes in the Pseudomonas genome database

Geoffrey L. Winsor et al.

NUCLEIC ACIDS RESEARCH (2016)

Review Biochemical Research Methods

Minimal genome: Worthwhile or worthless efforts toward being smaller?

Donghui Choe et al.

BIOTECHNOLOGY JOURNAL (2016)

Article Biotechnology & Applied Microbiology

Engineering of a Highly Efficient Escherichia coli Strain for Mevalonate Fermentation through Chromosomal Integration

Jilong Wang et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2016)

Article Biotechnology & Applied Microbiology

Anoxic metabolism and biochemical production in Pseudomonas putida F1 driven by a bioelectrochemical system

Bin Lai et al.

BIOTECHNOLOGY FOR BIOFUELS (2016)

Article Biotechnology & Applied Microbiology

Metabolic engineering of Bacillus subtilis for chiral pure meso-2,3-butanediol production

Jing Fu et al.

BIOTECHNOLOGY FOR BIOFUELS (2016)

Review Biochemistry & Molecular Biology

Engineering Cellular Metabolism

Jens Nielsen et al.

Review Biochemical Research Methods

Development of a commercial scale process for production of 1,4-butanediol from sugar

Anthony Burgard et al.

CURRENT OPINION IN BIOTECHNOLOGY (2016)

Review Biochemical Research Methods

The quest for the minimal bacterial genome

Esteban Martinez-Garcia et al.

CURRENT OPINION IN BIOTECHNOLOGY (2016)

Review Biochemical Research Methods

Opportunities and challenges in biological lignin valorization

Gregg T. Beckham et al.

CURRENT OPINION IN BIOTECHNOLOGY (2016)

Review Biochemistry & Molecular Biology

From dirt to industrial applications: Pseudomonas putida as a Synthetic Biology chassis for hosting harsh biochemical reactions

Pablo I. Nike et al.

CURRENT OPINION IN CHEMICAL BIOLOGY (2016)

Review Biochemistry & Molecular Biology

Microbial production of polyhydroxyalkanoates (PHAs) and its copolymers: A review of recent advancements

Anbreen Anjum et al.

INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES (2016)

Article Biotechnology & Applied Microbiology

Ammonium acrylate biomanufacturing by an engineered Rhodococcus ruber with nitrilase overexpression and double-knockout of nitrile hydratase and amidase

Jizhe Sun et al.

JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY (2016)

Article Biotechnology & Applied Microbiology

Metabolic design of a platform Escherichia coli strain producing various chorismate derivatives

Shuhei Noda et al.

METABOLIC ENGINEERING (2016)

Article Biotechnology & Applied Microbiology

Production of specific-molecular-weight hyaluronan by metabolically engineered Bacillus subtilis 168

Peng Jin et al.

METABOLIC ENGINEERING (2016)

Article Biotechnology & Applied Microbiology

CRISPR/Cas9 mediated targeted mutagenesis of the fast growing cyanobacterium Synechococcus elongatus UTEX 2973

Kristen E. Wendt et al.

MICROBIAL CELL FACTORIES (2016)

Article Biotechnology & Applied Microbiology

Genetic tools for advancement of Synechococcus sp PCC 7002 as a cyanobacterial chassis

Anne M. Ruffing et al.

MICROBIAL CELL FACTORIES (2016)

Article Biotechnology & Applied Microbiology

A novel strategy for protein production using non-classical secretion pathway in Bacillus subtilis

Jingqi Chen et al.

MICROBIAL CELL FACTORIES (2016)

Article Biochemical Research Methods

Vibrio natriegens as a fast-growing host for molecular biology

Matthew T. Weinstock et al.

NATURE METHODS (2016)

Review Microbiology

Synthetic biology to access and expand nature's chemical diversity

Michael J. Smanski et al.

NATURE REVIEWS MICROBIOLOGY (2016)

Article Multidisciplinary Sciences

Design and synthesis of a minimal bacterial genome

Clyde A. Hutchison et al.

SCIENCE (2016)

Review Biotechnology & Applied Microbiology

Fed-Batch Biomolecule Production by Bacillus subtilis: A State of the Art Review

Sibel Ozturk et al.

TRENDS IN BIOTECHNOLOGY (2016)

Article Biochemical Research Methods

Using RNA as Molecular Code for Programming Cellular Function

Manish Kushwaha et al.

ACS SYNTHETIC BIOLOGY (2016)

Article Biotechnology & Applied Microbiology

Improvement of Bacillus subtilis for poly-γ-glutamic acid production by genome shuffling

Wei Zeng et al.

MICROBIAL BIOTECHNOLOGY (2016)

Article Biotechnology & Applied Microbiology

Unknown unknowns: essential genes in quest for function

Antoine Danchin et al.

MICROBIAL BIOTECHNOLOGY (2016)

Article Biotechnology & Applied Microbiology

Metabolic Engineering of Pseudomonas putida KT2440 for the Production of para-Hydroxy Benzoic Acid

Shiqin Yu et al.

FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY (2016)

Article Biotechnology & Applied Microbiology

Metabolic Engineering of a Novel Muconic Acid Biosynthesis Pathway via 4-Hydroxybenzoic Acid in Escherichia coli

Sudeshna Sengupta et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2015)

Article Biotechnology & Applied Microbiology

Multigene Editing in the Escherichia coli Genome via the CRISPR-Cas9 System

Yu Jiang et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2015)

Review Biotechnology & Applied Microbiology

Pseudomonas putida-a versatile host for the production of natural products

Anita Loeschcke et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2015)

Review Biotechnology & Applied Microbiology

Impact of synthetic biology and metabolic engineering on industrial production of fine chemicals

David Jullesson et al.

BIOTECHNOLOGY ADVANCES (2015)

Article Biochemistry & Molecular Biology

Using Genome-scale Models to Predict Biological Capabilities

Edward J. O'Brien et al.

Review Biochemical Research Methods

Engineering cyanobacteria for direct biofuel production from CO2

Philipp Savakis et al.

CURRENT OPINION IN BIOTECHNOLOGY (2015)

Review Biotechnology & Applied Microbiology

Deinococcus as new chassis for industrial biotechnology: biology, physiology and tools

E. Gerber et al.

JOURNAL OF APPLIED MICROBIOLOGY (2015)

Review Biotechnology & Applied Microbiology

Improving Protein Production on the Level of Regulation of both Expression and Secretion Pathways in Bacillus subtilis

Yafeng Sone et al.

JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY (2015)

Review Biotechnology & Applied Microbiology

Production of Biopharmaceuticals in E. coli: Current Scenario and Future Perspectives

Mohammed N. Baeshen et al.

JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY (2015)

Review Biotechnology & Applied Microbiology

Applications and advances of metabolite biosensors for metabolic engineering

Di Liu et al.

METABOLIC ENGINEERING (2015)

Article Biochemical Research Methods

Tn7-Based Device for Calibrated Heterologous Gene Expression in Pseudomonas putida

Sebastian Zobel et al.

ACS SYNTHETIC BIOLOGY (2015)

Article Microbiology

Metabolic Engineering of Pseudomonas putida KT2440 to Produce Anthranilate from Glucose

Jannis Kuepper et al.

FRONTIERS IN MICROBIOLOGY (2015)

Article Biotechnology & Applied Microbiology

Use of Adaptive Laboratory Evolution To Discover Key Mutations Enabling Rapid Growth of Escherichia coli K-12 MG1655 on Glucose Minimal Medium

Ryan A. LaCroix et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2015)

Article Biotechnology & Applied Microbiology

High Cell Density Cultivation of Pseudomonas putida KT2440 Using Glucose Without the Need for Oxygen Enriched Air Supply

Reeta Davis et al.

BIOTECHNOLOGY AND BIOENGINEERING (2015)

Article Biochemistry & Molecular Biology

SEVA 2.0: an update of the Standard European Vector Architecture for de-/re-construction of bacterial functionalities

Esteban Martinez-Garcia et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biotechnology & Applied Microbiology

Exacerbation of substrate toxicity by IPTG in Escherichia coli BL21 (DE3) carrying a synthetic metabolic pathway

Pavel Dvorak et al.

MICROBIAL CELL FACTORIES (2015)

Article Biology

The unexhausted potential of E. coli

Zachary D. Blount

ELIFE (2015)

Article Biotechnology & Applied Microbiology

Genome reduction boosts heterologous gene expression in Pseudomonas putida

Sarah Lieder et al.

MICROBIAL CELL FACTORIES (2015)

Review Biotechnology & Applied Microbiology

Shikimic acid production in Escherichia coli: from classical metabolic engineering strategies to omics applied to improve its production

Juan Andres Martinez et al.

FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY (2015)

Article Biotechnology & Applied Microbiology

Genetic engineering of Pseudomonas putida KT2440 for rapid and high-yield production of vanillin from ferulic acid

Nadja Graf et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2014)

Article Biotechnology & Applied Microbiology

Development of an enhanced chromosomal expression system based on porin synthesis operon for halophile Halomonas sp.

Jin Yin et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2014)

Article Biotechnology & Applied Microbiology

Enhancing recombinant protein production with an Escherichia coli host strain lacking insertion sequences

Myung Keun Park et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2014)

Article Biotechnology & Applied Microbiology

Genetically engineering cyanobacteria to convert CO2, water, and light into the long-chain hydrocarbon farnesene

Charles Halfmann et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2014)

Review Biochemical Research Methods

Microbial production of amino acids and derived chemicals: Synthetic biology approaches to strain development

Volker F. Wendisch

CURRENT OPINION IN BIOTECHNOLOGY (2014)

Article Microbiology

The metabolic cost of flagellar motion in Pseudomonas putida KT2440

Esteban Martinez-Garcia et al.

ENVIRONMENTAL MICROBIOLOGY (2014)

Review Microbiology

Biotechnological domestication of pseudomonads using synthetic biology

Pablo I. Nikel et al.

NATURE REVIEWS MICROBIOLOGY (2014)

Article Biotechnology & Applied Microbiology

Overexpression of a non-native deoxyxylulose-dependent vitamin B6 pathway in Bacillus subtilis for the production of pyridoxine

Fabian M. Commichau et al.

METABOLIC ENGINEERING (2014)

Article Biotechnology & Applied Microbiology

Modular pathway engineering of Bacillus subtilis for improved N-acetylglucosamine production

Yanfeng Liu et al.

METABOLIC ENGINEERING (2014)

Article Biotechnology & Applied Microbiology

Development of Halomonas TD01 as a host for open production of chemicals

Xiao-Zhi Fu et al.

METABOLIC ENGINEERING (2014)

Article Biotechnology & Applied Microbiology

De novo production of the monoterpenoid geranic acid by metabolically engineered Pseudomonas putida

Jia Mi et al.

MICROBIAL CELL FACTORIES (2014)

Article Biotechnology & Applied Microbiology

Pseudomonas 2.0: genetic upgrading of P. putida KT2440 as an enhanced host for heterologous gene expression

Esteban Martínez-García et al.

Microbial Cell Factories (2014)

Review Microbiology

Systems Biology Perspectives on Minimal and Simpler Cells

Joana C. Xavier et al.

MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2014)

Article Multidisciplinary Sciences

Lignin valorization through integrated biological funneling and chemical catalysis

Jeffrey G. Linger et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Review Multidisciplinary Sciences

Lignin Valorization: Improving Lignin Processing in the Biorefinery

Arthur J. Ragauskas et al.

SCIENCE (2014)

Review Multidisciplinary Sciences

The new frontier of genome engineering with CRISPR-Cas9

Jennifer A. Doudna et al.

SCIENCE (2014)

Review Microbiology

Recombinant protein expression in Escherichia coli: advances and challenges

German L. Rosano et al.

FRONTIERS IN MICROBIOLOGY (2014)

Article Chemistry, Multidisciplinary

Lignin to lipid bioconversion by oleaginous Rhodococci

Matyas Kosa et al.

GREEN CHEMISTRY (2013)

Article Biotechnology & Applied Microbiology

Genetic manipulations restored the growth fitness of reduced-genome Escherichia coli

Yasutaka Hirokawa et al.

JOURNAL OF BIOSCIENCE AND BIOENGINEERING (2013)

Review Biochemistry & Molecular Biology

Basic and applied uses of genome-scale metabolic network reconstructions of Escherichia coli

Douglas McCloskey et al.

MOLECULAR SYSTEMS BIOLOGY (2013)

Review Chemistry, Medicinal

Development of Synechocystis sp PCC 6803 as a Phototrophic Cell Factory

Yi Yu et al.

MARINE DRUGS (2013)

Article Biotechnology & Applied Microbiology

RNA-guided editing of bacterial genomes using CRISPR-Cas systems

Wenyan Jiang et al.

NATURE BIOTECHNOLOGY (2013)

Article Biotechnology & Applied Microbiology

Engineering a synthetic pathway in cyanobacteria for isopropanol production directly from carbon dioxide and light

Tamami Kusakabe et al.

METABOLIC ENGINEERING (2013)

Article Biotechnology & Applied Microbiology

Engineering an anaerobic metabolic regime in Pseudomonas putida KT2440 for the anoxic biodegradation of 1,3-dichloroprop-1-ene

Pablo I. Nikel et al.

METABOLIC ENGINEERING (2013)

Article Biotechnology & Applied Microbiology

Engineering cyanobacteria for photosynthetic production of 3-hydroxybutyrate directly from CO2

Bo Wang et al.

METABOLIC ENGINEERING (2013)

Review Biotechnology & Applied Microbiology

Adaptive laboratory evolution - principles and applications for biotechnology

Martin Dragosits et al.

MICROBIAL CELL FACTORIES (2013)

Review Genetics & Heredity

From essential to persistent genes: a functional approach to constructing synthetic life

Carlos G. Acevedo-Rocha et al.

TRENDS IN GENETICS (2013)

Article Environmental Sciences

Transcriptomic fingerprinting of Pseudomonas putida under alternative physiological regimes

Juhyun Kim et al.

ENVIRONMENTAL MICROBIOLOGY REPORTS (2013)

Article Biochemical Research Methods

TREX: A Universal Tool for the Transfer and Expression of Biosynthetic Pathways in Bacteria

Anita Loeschcke et al.

ACS SYNTHETIC BIOLOGY (2013)

Article Microbiology

Draft Genome Sequence of the Fast-Growing Bacterium Vibrio natriegens Strain DSMZ 759

Isabel Maida et al.

GENOME ANNOUNCEMENTS (2013)

Article Biotechnology & Applied Microbiology

Manipulation of the Anoxic Metabolism in Escherichia coli by ArcB Deletion Variants in the ArcBA Two-Component System

Gonzalo N. Bidart et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2012)

Review Biotechnology & Applied Microbiology

Industrial biotechnology of Pseudomonas putida and related species

Ignacio Poblete-Castro et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2012)

Article Biotechnology & Applied Microbiology

pH-stat fed-batch process to enhance the production of cis, cis-muconate from benzoate by Pseudomonas putida KT2440-JD1

Jozef B. J. H. van Duuren et al.

BIOTECHNOLOGY PROGRESS (2012)

Review Biochemical Research Methods

Bio-based production of chemicals, materials and fuels - Corynebacterium glutamicum as versatile cell factory

Judith Becker et al.

CURRENT OPINION IN BIOTECHNOLOGY (2012)

Article Microbiology

Random and cyclical deletion of large DNA segments in the genome of Pseudomonas putida

Audrey Leprince et al.

ENVIRONMENTAL MICROBIOLOGY (2012)

Article Biotechnology & Applied Microbiology

Production and characterization of poly-β-hydroxybutyrate (PHB) polymer from Aulosira fertilissima

Shilalipi Samantaray et al.

JOURNAL OF APPLIED PHYCOLOGY (2012)

Article Chemistry, Multidisciplinary

Modular Pathway Engineering of Diterpenoid Synthases and the Mevalonic Acid Pathway for Miltiradiene Production

Yongjin J. Zhou et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2012)

Article Multidisciplinary Sciences

Detailing the optimality of photosynthesis in cyanobacteria through systems biology analysis

Juan Nogales et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Review Biochemical Research Methods

Synthetic Biology and Metabolic Engineering

Gregory Stephanopoulos

ACS SYNTHETIC BIOLOGY (2012)

Review Microbiology

Application of synthetic biology in cyanobacteria and algae

Bo Wang et al.

FRONTIERS IN MICROBIOLOGY (2012)

Article Biotechnology & Applied Microbiology

Driving Forces Enable High-Titer Anaerobic 1-Butanol Synthesis in Escherichia coli

Claire R. Shen et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)

Article Biotechnology & Applied Microbiology

Biosynthesis of zeaxanthin in recombinant Pseudomonas putida

Holger Beuttler et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2011)

Article Agricultural Engineering

Unsterile and continuous production of polyhydroxybutyrate by Halomonas TD01

Dan Tan et al.

BIORESOURCE TECHNOLOGY (2011)

Review Agricultural Engineering

Poly (glutamic acid) - An emerging biopolymer of commercial interest

Ishwar Bajaj et al.

BIORESOURCE TECHNOLOGY (2011)

Article Biotechnology & Applied Microbiology

Generation of a catR deficient mutant of P. putida KT2440 that produces cis, cis-muconate from benzoate at high rate and yield

J. B. J. H. van Duuren et al.

JOURNAL OF BIOTECHNOLOGY (2011)

Article Biochemistry & Molecular Biology

A comprehensive genome-scale reconstruction of Escherichia coli metabolism-2011

Jeffrey D. Orth et al.

MOLECULAR SYSTEMS BIOLOGY (2011)

Article Biochemistry & Molecular Biology

Metabolic engineering of Escherichia coli for direct production of 1,4-butanediol

Harry Yim et al.

NATURE CHEMICAL BIOLOGY (2011)

Article Biotechnology & Applied Microbiology

Optimization of a heterologous mevalonate pathway through the use of variant HMG-CoA reductases

Suzanne M. Ma et al.

METABOLIC ENGINEERING (2011)

Article Biotechnology & Applied Microbiology

Metabolic engineering of cyanobacteria for 1-butanol production from carbon dioxide

Ethan I. Lan et al.

METABOLIC ENGINEERING (2011)

Article Biotechnology & Applied Microbiology

Growth independent rhamnolipid production from glucose using the non-pathogenic Pseudomonas putida KT2440

Andreas Wittgens et al.

MICROBIAL CELL FACTORIES (2011)

Review Biotechnology & Applied Microbiology

Engineering cyanobacteria to generate high-value products

Daniel C. Ducat et al.

TRENDS IN BIOTECHNOLOGY (2011)

Review Biochemistry & Molecular Biology

Biosensors and their applications in microbial metabolic engineering

Fuzhong Zhang et al.

TRENDS IN MICROBIOLOGY (2011)

Article Biotechnology & Applied Microbiology

Increasing diterpene yield with a modular metabolic engineering system in E. coli: comparison of MEV and MEP isoprenoid precursor pathway engineering

Dana Morrone et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2010)

Article Biotechnology & Applied Microbiology

Accumulation of gene-targeted Bacillus subtilis mutations that enhance fermentative inosine production

Takayuki Asahara et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2010)

Article Biochemistry & Molecular Biology

Regulatory and metabolic rewiring during laboratory evolution of ethanol tolerance in E. coli

Hani Goodarzi et al.

MOLECULAR SYSTEMS BIOLOGY (2010)

Article Biochemistry & Molecular Biology

Evolution, genomic analysis, and reconstruction of isobutanol tolerance in Escherichia coli

Shota Atsumi et al.

MOLECULAR SYSTEMS BIOLOGY (2010)

Article Biotechnology & Applied Microbiology

Engineering a platform for photosynthetic isoprene production in cyanobacteria, using Synechocystis as the model organism

Pia Lindberg et al.

METABOLIC ENGINEERING (2010)

Article Multidisciplinary Sciences

Genome-minimized Streptomyces host for the heterologous expression of secondary metabolism

Mamoru Komatsua et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Review Multidisciplinary Sciences

Manufacturing Molecules Through Metabolic Engineering

Jay D. Keasling

SCIENCE (2010)

Article Multidisciplinary Sciences

Creation of a Bacterial Cell Controlled by a Chemically Synthesized Genome

Daniel G. Gibson et al.

SCIENCE (2010)

Article Multidisciplinary Sciences

Isoprenoid Pathway Optimization for Taxol Precursor Overproduction in Escherichia coli

Parayil Kumaran Ajikumar et al.

SCIENCE (2010)

Article Biotechnology & Applied Microbiology

Bioproduction of p-Hydroxystyrene from Glucose by the Solvent-Tolerant Bacterium Pseudomonas putida S12 in a Two-Phase Water-Decanol Fermentation

Suzanne Verhoef et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)

Review Biotechnology & Applied Microbiology

Recent progress on industrial fermentative production of acetone-butanol-ethanol by Clostridium acetobutylicum in China

Ye Ni et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2009)

Article Biotechnology & Applied Microbiology

PutidaNET: Interactome database service and network analysis of Pseudomonas putida KT2440

Seong-Jin Park et al.

BMC GENOMICS (2009)

Article Chemistry, Multidisciplinary

Metabolic engineering of cyanobacteria for ethanol production

Jason Dexter et al.

ENERGY & ENVIRONMENTAL SCIENCE (2009)

Article Multidisciplinary Sciences

Programming cells by multiplex genome engineering and accelerated evolution

Harris H. Wang et al.

NATURE (2009)

Article Multidisciplinary Sciences

Impact of Genome Reduction on Bacterial Metabolism and Its Regulation

Eva Yus et al.

SCIENCE (2009)

Review Mathematical & Computational Biology

A genome-scale metabolic reconstruction of Pseudomonas putida KT2440: iJN746 as a cell factory

Juan Nogales et al.

BMC SYSTEMS BIOLOGY (2008)

Article Genetics & Heredity

Enhanced recombinant protein productivity by genome reduction in Bacillus subtilis

Takuya Morimoto et al.

DNA RESEARCH (2008)

Review Microbiology

Towards environmental systems biology of Shewanella

James K. Fredrickson et al.

NATURE REVIEWS MICROBIOLOGY (2008)

Article Multidisciplinary Sciences

Targeted Development of Registries of Biological Parts

Jean Peccoud et al.

PLOS ONE (2008)

Article Multidisciplinary Sciences

Historical contingency and the evolution of a key innovation in an experimental population of Escherichia coli

Zachary D. Blount et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Review Biochemistry & Molecular Biology

Bacillus minimum genome factory: effective utilization of microbial genome information

Katsutoshi Ara et al.

BIOTECHNOLOGY AND APPLIED BIOCHEMISTRY (2007)

Article Multidisciplinary Sciences

The complete genome of Rhodococcus sp RHA1 provides insights into a catabolic powerhouse

Michael P. McLeod et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Multidisciplinary Sciences

Emergent properties of reduced-genome Escherichia coli

G Pósfai et al.

SCIENCE (2006)

Article Biochemistry & Molecular Biology

Transcriptional tradeoff between metabolic and stress-response programs in Pseudomonas putida KT2440 cells exposed to toluene

P Domínguez-Cuevas et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2006)

Article Biotechnology & Applied Microbiology

An efficient method of selectable marker gene excision by Xer recombination for gene replacement in bacterial chromosomes

AE Bloor et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2006)

Article Biochemistry & Molecular Biology

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

Tomoya Baba et al.

MOLECULAR SYSTEMS BIOLOGY (2006)

Article Biotechnology & Applied Microbiology

Engineering of solvent-tolerant Pseudomonas putida S12 for bioproduction of phenol from glucose

NJP Wierckx et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2005)

Review Multidisciplinary Sciences

Foundations for engineering biology

D Endy

NATURE (2005)

Article Biotechnology & Applied Microbiology

The solvent-tolerant Pseudomonas putida S12 as host for the production of cinnamic acid from glucose

K Nijkamp et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2005)

Review Biotechnology & Applied Microbiology

Growing E-coli to high cell density -: A historical perspective on method development

J Shiloach et al.

BIOTECHNOLOGY ADVANCES (2005)

Article Biotechnology & Applied Microbiology

Enhancement of inosine production by Bacillus subtilis through suppression of carbon overflow by sodium citrate

SX Chen et al.

BIOTECHNOLOGY LETTERS (2005)

Article Biochemistry & Molecular Biology

Cell size and nucleoid organization of engineered Escherichia coli cells with a reduced genome

M Hashimoto et al.

MOLECULAR MICROBIOLOGY (2005)

Review Microbiology

Insights into the genomic basis of niche specificity of Pseudomonas putida KT2440

VAPM dos Santos et al.

ENVIRONMENTAL MICROBIOLOGY (2004)

Review Biochemistry & Molecular Biology

Bacillus subtilis as cell factory for pharmaceutical proteins:: a biotechnological approach to optimize the host organism

L Westers et al.

BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH (2004)

Review Microbiology

Proteomics of protein secretion by Bacillus subtilis:: Separating the secrets of the secretome

H Tjalsma et al.

MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2004)

Review Biochemistry & Molecular Biology

Developments in the use of Bacillus species for industrial production

M Schallmey et al.

CANADIAN JOURNAL OF MICROBIOLOGY (2004)

Article Biotechnology & Applied Microbiology

Engineering a mevalonate pathway in Escherichia coli for production of terpenoids

VJJ Martin et al.

NATURE BIOTECHNOLOGY (2003)

Review Biotechnology & Applied Microbiology

Metabolic engineering and pathway construction for biotechnological production of relevant polyhydroxyalkanoates in microorganisms

A Steinbuchel et al.

BIOCHEMICAL ENGINEERING JOURNAL (2003)

Article Microbiology

Genomic analysis of the aromatic catabolic pathways from Pseudomonas putida KT2440

JI Jiménez et al.

ENVIRONMENTAL MICROBIOLOGY (2002)

Review Agricultural Engineering

The production of poly-(γ-glutamic acid) from microorganisms and its various applications

IL Shih et al.

BIORESOURCE TECHNOLOGY (2001)

Article Biotechnology & Applied Microbiology

Integrated bioproduction and extraction of 3-methylcatechol

LE Hüsken et al.

JOURNAL OF BIOTECHNOLOGY (2001)

Article Multidisciplinary Sciences

One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products

KA Datsenko et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)

Review Biotechnology & Applied Microbiology

Three biotechnical processes using Ashbya gossypii, Candida famata, or Bacillus subtilis compete with chemical riboflavin production

KP Stahmann et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2000)