Related references
Note: Only part of the references are listed.290 metagenome-assembled genomes from the Mediterranean Sea: a resource for marine microbiology
Benjamin J. Tully et al.
PEERJ (2017)
BinSanity: unsupervised clustering of environmental microbial assemblies using coverage and affinity propagation
Elaina D. Graham et al.
PEERJ (2017)
Potential Mechanisms for Microbial Energy Acquisition in Oxic Deep-Sea Sediments
Benjamin J. Tully et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2016)
Genomic reconstruction of a novel, deeply branched sediment archaeal phylum with pathways for acetogenesis and sulfur reduction
Kiley W. Seitz et al.
ISME JOURNAL (2016)
MEGAHIT v1.0: A fast and scalable metagenome assembler driven by advanced methodologies and community practices
Dinghua Li et al.
METHODS (2016)
Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system
Karthik Anantharaman et al.
NATURE COMMUNICATIONS (2016)
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
Donovan H. Parks et al.
GENOME RESEARCH (2015)
Structure and function of the global ocean microbiome
Shinichi Sunagawa et al.
SCIENCE (2015)
Anvi'o: an advanced analysis and visualization platformfor 'omics data
A. Murat Eren et al.
PEERJ (2015)
Open science resources for the discovery and analysis of Tara Oceans data
Stephane Pesant et al.
SCIENTIFIC DATA (2015)
Metagenome-assembled genomes uncover a global brackish microbiome
Luisa W. Hugerth et al.
GENOME BIOLOGY (2015)
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
Yang Liao et al.
BIOINFORMATICS (2014)
Multiple nutrient stresses at intersecting Pacific Ocean biomes detected by protein biomarkers
Mak A. Saito et al.
SCIENCE (2014)
Expression patterns reveal niche diversification in a marine microbial assemblage
Scott M. Gifford et al.
ISME JOURNAL (2013)
Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes
Mads Albertsen et al.
NATURE BIOTECHNOLOGY (2013)
Gene and translation initiation site prediction in metagenomic sequences
Doug Hyatt et al.
BIOINFORMATICS (2012)
SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes
Elmar Pruesse et al.
BIOINFORMATICS (2012)
CD-HIT: accelerated for clustering the next-generation sequencing data
Limin Fu et al.
BIOINFORMATICS (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
HMMER web server: interactive sequence similarity searching
Robert D. Finn et al.
NUCLEIC ACIDS RESEARCH (2011)
A Holistic Approach to Marine Eco-Systems Biology
Eric Karsenti et al.
PLOS BIOLOGY (2011)
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan et al.
BIOINFORMATICS (2010)
FastTree 2-Approximately Maximum-Likelihood Trees for Large Alignments
Morgan N. Price et al.
PLOS ONE (2010)
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
Salvador Capella-Gutierrez et al.
BIOINFORMATICS (2009)
The microbial engines that drive Earth's biogeochemical cycles
Paul G. Falkowski et al.
SCIENCE (2008)
RNAmmer:: consistent and rapid annotation of ribosomal RNA genes
Karin Lagesen et al.
NUCLEIC ACIDS RESEARCH (2007)
Community structure and metabolism through reconstruction of microbial genomes from the environment
GW Tyson et al.
NATURE (2004)
MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
NUCLEIC ACIDS RESEARCH (2004)
ARB:: a software environment for sequence data
W Ludwig et al.
NUCLEIC ACIDS RESEARCH (2004)
Identification and phylogenetic sorting of bacterial lineages with universally conserved genes and proteins
SR Santos et al.
ENVIRONMENTAL MICROBIOLOGY (2004)
The Pfam Protein Families Database
A Bateman et al.
NUCLEIC ACIDS RESEARCH (2002)