Journal
GIGASCIENCE
Volume 7, Issue 7, Pages -Publisher
OXFORD UNIV PRESS
DOI: 10.1093/gigascience/giy072
Keywords
metagenomics; reproducibility; workflow; containerization; docker; singularity
Categories
Funding
- Medical Research Council [MR/M004422/1]
- Wellcome Trust
- Medical Research Council
- European Union
- National Institute for Health Research
- MRC [MR/M004422/1] Funding Source: UKRI
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YAMP (Yet Another Metagenomics Pipeline) is a user-friendly workflow that enables the analysis of whole shotgun metagenomic data while using containerization to ensure computational reproducibility and facilitate collaborative research. YAMP can be executed on any UNIX-like system and offers seamless support for multiple job schedulers as well as for the Amazon AWS cloud. Although YAMP was developed to be ready to use by nonexperts, bioinformaticians will appreciate its flexibility, modularization, and simple customization.
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