Related references
Note: Only part of the references are listed.TCSBN: a database of tissue and cancer specific biological networks
Sunjae Lee et al.
NUCLEIC ACIDS RESEARCH (2018)
Systems biology in hepatology: approaches and applications
Adil Mardinoglu et al.
NATURE REVIEWS GASTROENTEROLOGY & HEPATOLOGY (2018)
Drug Repositioning for Effective Prostate Cancer Treatment
Beste Turanli et al.
FRONTIERS IN PHYSIOLOGY (2018)
Metformin Is Associated With Higher Relative Abundance of Mucin-Degrading Akkermansia muciniphila and Several Short-Chain Fatty Acid-Producing Microbiota in the Gut
Jacobo de la Cuesta-Zuluaga et al.
DIABETES CARE (2017)
Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota
Stefania Magnusdottir et al.
NATURE BIOTECHNOLOGY (2017)
Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center
Alice R. Wattam et al.
NUCLEIC ACIDS RESEARCH (2017)
Network analyses identify liver-specific targets for treating liver diseases
Sunjae Lee et al.
MOLECULAR SYSTEMS BIOLOGY (2017)
Metformin alters the gut microbiome of individuals with treatment-naive type 2 diabetes, contributing to the therapeutic effects of the drug
Hao Wu et al.
NATURE MEDICINE (2017)
Synthetic lethality and cancer
Nigel J. O'Neil et al.
NATURE REVIEWS GENETICS (2017)
A pathology atlas of the human cancer transcriptome
Mathias Uhlen et al.
SCIENCE (2017)
The Microbiome and Blood Pressure: Can Microbes Regulate Our Blood Pressure?
Souhaila Al Khodor et al.
FRONTIERS IN PEDIATRICS (2017)
New Challenges to Study Heterogeneity in Cancer Redox Metabolism
Rui Benfeitas et al.
FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY (2017)
Gut biogeography of the bacterial microbiota
Gregory P. Donaldson et al.
NATURE REVIEWS MICROBIOLOGY (2016)
Confounding Effects of Metformin on the Human Gut Microbiome in Type 2 Diabetes
Adil Mardinoglu et al.
CELL METABOLISM (2016)
Genome-scale study reveals reduced metabolic adaptability in patients with non-alcoholic fatty liver disease
Tuulia Hyotylainen et al.
NATURE COMMUNICATIONS (2016)
Applicatons of Genome-Scale Metabolic Models in Biotechnology and Systems Medicine
Cheng Zhang et al.
FRONTIERS IN PHYSIOLOGY (2016)
Fast-SL: an efficient algorithm to identify synthetic lethal sets in metabolic networks
Aditya Pratapa et al.
BIOINFORMATICS (2015)
Quantifying Diet-Induced Metabolic Changes of the Human Gut Microbiome
Saeed Shoaie et al.
CELL METABOLISM (2015)
The gut microbiota modulates host amino acid and glutathione metabolism in mice
Adil Mardinoglu et al.
MOLECULAR SYSTEMS BIOLOGY (2015)
Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota
Kristoffer Forslund et al.
NATURE (2015)
Proteome- and Transcriptome-Driven Reconstruction of the Human Myocyte Metabolic Network and Its Use for Identification of Markers for Diabetes
Leif Väremo et al.
Cell Reports (2015)
From next-generation sequencing to systematic modeling of the gut microbiome
Boyang Ji et al.
FRONTIERS IN GENETICS (2015)
Butyrate Production in Engineered Escherichia coli With Synthetic Scaffolds
Jang-Mi Baek et al.
BIOTECHNOLOGY AND BIOENGINEERING (2013)
Computing minimal nutrient sets from metabolic networks via linear constraint solving
Steven Eker et al.
BMC BIOINFORMATICS (2013)
Gut metagenome in European women with normal, impaired and diabetic glucose control
Fredrik H. Karlsson et al.
NATURE (2013)
EcoCyc: fusing model organism databases with systems biology
Ingrid M. Keseler et al.
NUCLEIC ACIDS RESEARCH (2013)
Understanding the interactions between bacteria in the human gut through metabolic modeling
Saeed Shoaie et al.
SCIENTIFIC REPORTS (2013)
The RAVEN Toolbox and Its Use for Generating a Genome-scale Metabolic Model for Penicillium chrysogenum
Rasmus Agren et al.
PLOS COMPUTATIONAL BIOLOGY (2013)
Bacterial Adaptation of Respiration from Oxic to Microoxic and Anoxic Conditions: Redox Control
Emilio Bueno et al.
ANTIOXIDANTS & REDOX SIGNALING (2012)
Systems medicine and metabolic modelling
A. Mardinoglu et al.
JOURNAL OF INTERNAL MEDICINE (2012)
A metagenome-wide association study of gut microbiota in type 2 diabetes
Junjie Qin et al.
NATURE (2012)
Functional interactions between the gut microbiota and host metabolism
Valentina Tremaroli et al.
NATURE (2012)
The effects of methane and hydrogen gases produced by enteric bacteria on ileal motility and colonic transit time
J. Jahng et al.
NEUROGASTROENTEROLOGY AND MOTILITY (2012)
Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0
Jan Schellenberger et al.
NATURE PROTOCOLS (2011)
Microbial degradation of aromatic compounds - from one strategy to four
Georg Fuchs et al.
NATURE REVIEWS MICROBIOLOGY (2011)
High-throughput generation, optimization and analysis of genome-scale metabolic models
Christopher S. Henry et al.
NATURE BIOTECHNOLOGY (2010)
Diversity, metabolism and microbial ecology of butyrate-producing bacteria from the human large intestine
Petra Louis et al.
FEMS MICROBIOLOGY LETTERS (2009)
A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information
Adam M. Feist et al.
MOLECULAR SYSTEMS BIOLOGY (2007)
Alteration of sulfate and hydrogen metabolism in the human colon by changing intestinal transit rate
Stephen Lewis et al.
AMERICAN JOURNAL OF GASTROENTEROLOGY (2007)
Systematic analysis of conservation relations in Escherichia coli genome-scale metabolic network reveals novel growth media
M Imielinski et al.
BIOPHYSICAL JOURNAL (2006)
The concept of synthetic lethality in the context of anticancer therapy
WG Kaelin
NATURE REVIEWS CANCER (2005)
Akkermansia muciniphila gen. nov., sp nov., a human intestinal mucin-degrading bacterium
M Derrien et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2004)
Iron transport and signaling in Escherichia coli
V Braun et al.
FEBS LETTERS (2002)
The effect of increasing NADH availability on the redistribution of metabolic fluxes in Escherichia coli chemostat cultures
SJ Berríos-Rivera et al.
METABOLIC ENGINEERING (2002)
In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data
JS Edwards et al.
NATURE BIOTECHNOLOGY (2001)
Share Paper
