Related references
Note: Only part of the references are listed.Mustguseal: a server for multiple structure-guided sequence alignment of protein families
Dmitry A. Suplatov et al.
BIOINFORMATICS (2018)
Direct evidence that an extended hydrogen-bonding network influences activation of pyridoxal 5-phosphate in aspartate aminotransferase
Steven Dajnowicz et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2017)
Computational tools for enzyme improvement: why everyone can - and should - use them
Maximilian C. C. J. C. Ebert et al.
CURRENT OPINION IN CHEMICAL BIOLOGY (2017)
Threonine aldolases: perspectives in engineering and screening the enzymes with enhanced substrate and stereo specificities
Kateryna Fesko
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2016)
Mechanistic and Evolutionary Insights from the Reciprocal Promiscuity of Two Pyridoxal Phosphate-dependent Enzymes
Valerie W. C. Soo et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2016)
Parallel workflow manager for non-parallel bioinformatic applications to solve large-scale biological problems on a supercomputer
Dmitry Suplatov et al.
JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY (2016)
Expanding the threonine aldolase toolbox for the asymmetric synthesis of tertiary α-amino acids
Kateryna Fesko et al.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2015)
Chemistry and diversity of pyridoxal-5′-phosphate dependent enzymes
Robert S. Phillips
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS (2015)
Bioinformatic analysis of a PLP-dependent enzyme superfamily suitable for biocatalytic applications
Fabian Steffen-Munsberg et al.
BIOTECHNOLOGY ADVANCES (2015)
Evolution of Threonine Aldolases, a Diverse Family Involved in the Second Pathway of Glycine Biosynthesis
Guangxiu Liu et al.
JOURNAL OF MOLECULAR EVOLUTION (2015)
Robust enzyme design: Bioinformatic tools for improved protein stability
Dmitry Suplatov et al.
BIOTECHNOLOGY JOURNAL (2015)
Aspartate aminotransferase: An old dog teaches new tricks
Michael D. Toney
ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS (2014)
Systematic Analysis of Large Enzyme Families: Identification of Specificity- and Selectivity-Determining Hotspots
Juergen Pleiss
CHEMCATCHEM (2014)
On the catalytic mechanism and stereospecificity of Escherichia coli L-threonine aldolase
Martino L. di Salvo et al.
FEBS JOURNAL (2014)
Zebra: a web server for bioinformatic analysis of diverse protein families
Dmitry Suplatov et al.
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2014)
Bioinformatic analysis of protein families for identification of variable amino acid residues responsible for functional diversity
Dmitry Suplatov et al.
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2014)
pocketZebra: a web-server for automated selection and classification of subfamily-specific binding sites by bioinformatic analysis of diverse protein families
Dmitry Suplatov et al.
NUCLEIC ACIDS RESEARCH (2014)
L-allo-Threonine aldolase with an H128Y/S292R mutation from Aeromonas jandaei DK-39 reveals the structural basis of changes in substrate stereoselectivity
Hui-Min Qin et al.
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY (2014)
Biocatalytic Methods for CC Bond Formation
Kateryna Fesko et al.
CHEMCATCHEM (2013)
SPFP: Speed without compromise-A mixed precision model for GPU accelerated molecular dynamics simulations
Scott Le Grand et al.
COMPUTER PHYSICS COMMUNICATIONS (2013)
Computational design gains momentum in enzyme catalysis engineering
Hein J. Wijma et al.
FEBS JOURNAL (2013)
Routine Microsecond Molecular Dynamics Simulations with AMBER on GPUs. 2. Explicit Solvent Particle Mesh Ewald
Romelia Salomon-Ferrer et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2013)
Investigation of one-enzyme systems in the ω-transaminase-catalyzed synthesis of chiral amines
Kateryna Fesko et al.
JOURNAL OF MOLECULAR CATALYSIS B-ENZYMATIC (2013)
Structure-Based Mechanism for Early PLP-Mediated Steps of Rabbit Cytosolic Serine Hydroxymethyltransferase Reaction
Martino L. Di Salvo et al.
BIOMED RESEARCH INTERNATIONAL (2013)
Routine Access to Millisecond Time Scale Events with Accelerated Molecular Dynamics
Levi C. T. Pierce et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2012)
Revised AMBER Parameters for Bioorganic Phosphates
T. Steinbrecher et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2012)
C-H Activation in Pyridoxal-5′-phosphate Schiff Bases: The Role of the Imine Nitrogen. A Combined Experimental and Computational Study
Rodrigo Casasnovas et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2012)
Engineering the third wave of biocatalysis
U. T. Bornscheuer et al.
NATURE (2012)
Controlling reaction specificity in pyridoxal phosphate enzymes
Michael D. Toney
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS (2011)
Serine hydroxymethyltransferase: A model enzyme for mechanistic, structural, and evolutionary studies
Rita Florio et al.
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS (2011)
The PLP cofactor: Lessons from studies on model reactions
John P. Richard et al.
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS (2011)
Computational Mechanistic Studies Addressed to the Transimination Reaction Present in All Pyridoxal 5′-Phosphate-Requiring Enzymes
N. M. F. S. A. Cerqueira et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2011)
PROPKA3: Consistent Treatment of Internal and Surface Residues in Empirical pKa Predictions
Mats H. M. Olsson et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2011)
Biocatalytic Access to alpha,alpha-Dialkyl-alpha-amino Acids by a Mechanism-Based Approach
Kateryna Fesko et al.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2010)
The α/β-Hydrolase Fold 3DM Database (ABHDB) as a Tool for Protein Engineering
Robert Kourist et al.
CHEMBIOCHEM (2010)
The R.ED. tools: advances in RESP and ESP charge derivation and force field library building
Francois-Yves Dupradeau et al.
PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2010)
Role of a Conserved Active Site Cation-π Interaction in Escherichia coli Serine Hydroxymethyltransferase
Mirella Vivoli et al.
BIOCHEMISTRY (2009)
The B6 database: a tool for the description and classification of vitamin B6-dependent enzymatic activities and of the corresponding protein families
Riccardo Percudani et al.
BMC BIOINFORMATICS (2009)
Theoretical study on the distribution of atomic charges in the Schiff bases of 3-hydroxypyridine-4-aldehyde and alanine. The effect of the protonation state of the pyridine and imine nitrogen atoms
Rodrigo Casasnovas et al.
CHEMICAL PHYSICS (2009)
Lead Finder: An Approach To Improve Accuracy of Protein-Ligand Docking, Binding Energy Estimation, and Virtual Screening
Oleg V. Stroganov et al.
JOURNAL OF CHEMICAL INFORMATION AND MODELING (2008)
Four types of threonine aldolases:: Similarities and differences in kinetics/thermodynamics
Kateryna Fesko et al.
JOURNAL OF MOLECULAR CATALYSIS B-ENZYMATIC (2008)
An efficient plasmid vector for expression cloning of large numbers of PCR fragments in Escherichia coli
Christoph Reisinger et al.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2007)
PDB2PQR: expanding and upgrading automated preparation of biomolecular structures for molecular simulations
Todd J. Dolinsky et al.
NUCLEIC ACIDS RESEARCH (2007)
Threonine aldolases -: an emerging tool for organic synthesis
Johannes Steinreiber et al.
TETRAHEDRON (2007)
A genomic overview of pyridoxal-phosphate-dependent enzymes
R Percudani et al.
EMBO REPORTS (2003)
Conversion of a PLP-dependent racemase into an aldolase by a single active site mutation
FP Seebeck et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2003)
Strain is more important than electrostatic interaction in controlling the pKa of the catalytic group in aspartate aminotransferase
H Mizuguchi et al.
BIOCHEMISTRY (2001)
Altering the reaction specificity of eukaryotic ornithine decarboxylase
LK Jackson et al.
BIOCHEMISTRY (2000)
Share Paper
