Related references
Note: Only part of the references are listed.Whole genome sequencing identifies influenza A H3N2 transmission and offers superior resolution to classical typing methods
Dominik M. Meinel et al.
INFECTION (2018)
The evolution of seasonal influenza viruses
Velislava N. Petrova et al.
NATURE REVIEWS MICROBIOLOGY (2018)
Estimates of global seasonal influenza-associated respiratory mortality: a modelling study
A. Danielle Iuliano et al.
LANCET (2018)
Integrating patient and whole-genome sequencing data to provide insights into the epidemiology of seasonal influenza A(H3N2) viruses
Emily J. Goldstein et al.
MICROBIAL GENOMICS (2018)
Phandango: an interactive viewer for bacterial population genomics
James Hadfield et al.
BIOINFORMATICS (2018)
Influenza Research Database: An integrated bioinformatics resource for influenza virus research
Yun Zhang et al.
NUCLEIC ACIDS RESEARCH (2017)
GISAID: Global initiative on sharing all influenza data - from vision to reality
Yuelong Shu et al.
EUROSURVEILLANCE (2017)
Development of oseltamivir and zanamivir resistance in influenza A(H1N1)pdm09 virus, Denmark, 2014
R. Trebbien et al.
EUROSURVEILLANCE (2017)
Vaccination has minimal impact on the intrahost diversity of H3N2 influenza viruses
Kari Debbink et al.
PLOS PATHOGENS (2017)
Survey on the Use of Whole Genome Sequencing for Infectious Diseases Surveillance: Rapid Expansion of European National Capacities, 2015-2016
Joana Revez et al.
FRONTIERS IN PUBLIC HEALTH (2017)
Bioinformatic Analyses of Whole-Genome Sequence Data in a Public Health Laboratory
Kelly F. Oakeson et al.
EMERGING INFECTIOUS DISEASES (2017)
Viral deep sequencing needs an adaptive approach: IRMA, the iterative refinement meta-assembler (vol 17, 708, 2016)
Samuel S. Shepard et al.
BMC GENOMICS (2016)
Next generation sequencing for whole genome analysis and surveillance of influenza A viruses
Jana McGinnis et al.
JOURNAL OF CLINICAL VIROLOGY (2016)
Deep Sequencing Reveals Potential Antigenic Variants at Low Frequencies in Influenza A Virus-Infected Humans
Jorge M. Dinis et al.
JOURNAL OF VIROLOGY (2016)
Deep Sequencing of Influenza A Virus from a Human Challenge Study Reveals a Selective Bottleneck and Only Limited Intrahost Genetic Diversification
Ashley Sobel Leonard et al.
JOURNAL OF VIROLOGY (2016)
Quantifying influenza virus diversity and transmission in humans
Leo L. M. Poon et al.
NATURE GENETICS (2016)
PHYLOViZ Online: web-based tool for visualization, phylogenetic inference, analysis and sharing of minimum spanning trees
Bruno Ribeiro-Goncalves et al.
NUCLEIC ACIDS RESEARCH (2016)
Sensitive Detection and Simultaneous Discrimination of Influenza A and B Viruses in Nasopharyngeal Swabs in a Single Assay Using Next-Generation Sequencing-Based Diagnostics
Jiangqin Zhao et al.
PLOS ONE (2016)
Contamination-controlled high-throughput whole genome sequencing for influenza A viruses using the MiSeq sequencer
Hong Kai Lee et al.
SCIENTIFIC REPORTS (2016)
nextflu: real-time tracking of seasonal influenza virus evolution in humans
Richard A. Neher et al.
BIOINFORMATICS (2015)
Prokka: rapid prokaryotic genome annotation
Torsten Seemann
BIOINFORMATICS (2014)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
Universal Influenza B Virus Genomic Amplification Facilitates Sequencing, Diagnostics, and Reverse Genetics
Bin Zhou et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2014)
Genomewide Analysis of Reassortment and Evolution of Human Influenza A(H3N2) Viruses Circulating between 1968 and 2011
Kim B. Westgeest et al.
JOURNAL OF VIROLOGY (2014)
Duplex Molecular Assay Intended for Point-of-Care Diagnosis of Influenza A/B Virus Infection
Liang-Ta Wu et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2013)
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
Anton Bankevich et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2012)
Ultrasensitive detection of rare mutations using next-generation targeted resequencing
Patrick Flaherty et al.
NUCLEIC ACIDS RESEARCH (2012)
Challenges and opportunities in estimating viral genetic diversity from next-generation sequencing data
Niko Beerenwinkel et al.
FRONTIERS IN MICROBIOLOGY (2012)
The variant call format and VCFtools
Petr Danecek et al.
BIOINFORMATICS (2011)
Integrative genomics viewer
James T. Robinson et al.
NATURE BIOTECHNOLOGY (2011)
FastTree 2-Approximately Maximum-Likelihood Trees for Large Alignments
Morgan N. Price et al.
PLOS ONE (2010)
progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement
Aaron E. Darling et al.
PLOS ONE (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
Single-Reaction Genomic Amplification Accelerates Sequencing and Vaccine Production for Classical and Swine Origin Human Influenza A Viruses
Bin Zhou et al.
JOURNAL OF VIROLOGY (2009)
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
K Katoh et al.
NUCLEIC ACIDS RESEARCH (2002)