4.7 Article

Subtractive proteomics to identify novel drug targets and reverse vaccinology for the development of chimeric vaccine against Acinetobacter baumannii

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

In-silico screening and experimental validation reveal L-Adrenaline as anti-biofilm molecule against biofilm-associated protein (Bap) producing Acinetobacter baumannii

Vishvanath Tiwari et al.

INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES (2018)

Article Biotechnology & Applied Microbiology

Rationale and design of an inhibitor of RecA protein as an inhibitor of Acinetobacter baumannii

Vishvanath Tiwari et al.

JOURNAL OF ANTIBIOTICS (2018)

Article Biochemistry & Molecular Biology

An In Silico Identification of Common Putative Vaccine Candidates against Treponema pallidum: A Reverse Vaccinology and Subtractive Genomics Based Approach

Arun Kumar Jaiswal et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2017)

Article Infectious Diseases

Screening of Herbal-Based Bioactive Extract Against Carbapenem-Resistant Strain of Acinetobacter baumannii

Monalisa Tiwari et al.

MICROBIAL DRUG RESISTANCE (2016)

Article Biotechnology & Applied Microbiology

In silico design of a DNA-based HIV-1 multi-epitope vaccine for Chinese populations

Yi Yang et al.

HUMAN VACCINES & IMMUNOTHERAPEUTICS (2015)

Review Microbiology

Antimicrobial active herbal compounds against Acinetobacter baumannii and other pathogens

Vishvanath Tiwari et al.

FRONTIERS IN MICROBIOLOGY (2015)

Article Microbiology

ARG-ANNOT, a New Bioinformatic Tool To Discover Antibiotic Resistance Genes in Bacterial Genomes

Sushim Kumar Gupta et al.

ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2014)

Article Biochemistry & Molecular Biology

Conformational stability of OXA-51 beta-lactamase explains its role in carbapenem resistance of Acinetobacter baumannii

Vishvanath Tiwari et al.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2014)

Article Multidisciplinary Sciences

De Novo Structure Prediction of Globular Proteins Aided by Sequence Variation-Derived Contacts

Tomasz Kosciolek et al.

PLOS ONE (2014)

Article Biochemistry & Molecular Biology

Identification of Druggable Targets for Acinetobacter baumannii Via Subtractive Genomics and Plausible Inhibitors for MurA and MurB

Navkiran Kaur et al.

APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY (2013)

Article Genetics & Heredity

MHCcluster, a method for functional clustering of MHC molecules

Martin Thomsen et al.

IMMUNOGENETICS (2013)

Article Biochemistry & Molecular Biology

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

Koichiro Tamura et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Article Multidisciplinary Sciences

CMG-Biotools, a Free Workbench for Basic Comparative Microbial Genomics

Tammi Vesth et al.

PLOS ONE (2013)

Article Multidisciplinary Sciences

In Silico Approach for Predicting Toxicity of Peptides and Proteins

Sudheer Gupta et al.

PLOS ONE (2013)

Article Multidisciplinary Sciences

Identification of Novel Vaccine Candidates against Multidrug-Resistant Acinetobacter baumannii

Danilo G. Moriel et al.

PLOS ONE (2013)

Article Biochemical Research Methods

Properties of MHC Class I Presented Peptides That Enhance Immunogenicity

Jorg J. A. Calis et al.

PLOS COMPUTATIONAL BIOLOGY (2013)

Article Biochemistry & Molecular Biology

In-silico modeling of a novel OXA-51 from β-lactam-resistant Acinetobacter baumannii and its interaction with various antibiotics

Vishvanath Tiwari et al.

JOURNAL OF MOLECULAR MODELING (2012)

Article Biochemistry & Molecular Biology

Immune epitope database analysis resource

Yohan Kim et al.

NUCLEIC ACIDS RESEARCH (2012)

Review Immunology

A review of vaccine development and research for industry animals in Korea

Nak-Hyung Lee et al.

CLINICAL AND EXPERIMENTAL VACCINE RESEARCH (2012)

Article Biochemistry & Molecular Biology

DrugBank 3.0: a comprehensive resource for 'Omics' research on drugs

Craig Knox et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Biochemical Research Methods

High-throughput prediction of protein antigenicity using protein microarray data

Christophe N. Magnan et al.

BIOINFORMATICS (2010)

Article Biochemical Research Methods

CD-HIT Suite: a web server for clustering and comparing biological sequences

Ying Huang et al.

BIOINFORMATICS (2010)

Article Biochemical Research Methods

Peptide binding predictions for HLA DR, DP and DQ molecules

Peng Wang et al.

BMC BIOINFORMATICS (2010)

Article Mathematical & Computational Biology

A novel strategy of epitope design in Neisseria gonorrhoeae

Debmalya Barh et al.

BIOINFORMATION (2010)

Article Biochemical Research Methods

SOLpro: accurate sequence-based prediction of protein solubility

Christophe N. Magnan et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

ElliPro: a new structure-based tool for the prediction of antibody epitopes

Julia Ponomarenko et al.

BMC BIOINFORMATICS (2008)

Article Biochemistry & Molecular Biology

Predicting linear B-cell epitopes using string kernels

Yasser El-Manzalawy et al.

JOURNAL OF MOLECULAR RECOGNITION (2008)

Article Biochemistry & Molecular Biology

NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8-11

Claus Lundegaard et al.

NUCLEIC ACIDS RESEARCH (2008)

Article Biochemical Research Methods

A systematic assessment of MHC class II peptide binding predictions and evaluation of a consensus approach

Peng Wang et al.

PLOS COMPUTATIONAL BIOLOGY (2008)

Article Biochemical Research Methods

Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction

Mette V. Larsen et al.

BMC BIOINFORMATICS (2007)

Article Biophysics

Antibody-protein interactions: benchmark datasets and prediction tools evaluation

Julia V. Ponomarenko et al.

BMC STRUCTURAL BIOLOGY (2007)

Article Biochemistry & Molecular Biology

RNAmmer:: consistent and rapid annotation of ribosomal RNA genes

Karin Lagesen et al.

NUCLEIC ACIDS RESEARCH (2007)

Article Biochemical Research Methods

VaxiJen: a server for prediction of protective antigens, tumour antigens and subunit vaccines

Irini A. Doytchinova et al.

BMC BIOINFORMATICS (2007)

Article Biochemistry & Molecular Biology

AlgPred: prediction of allergenic proteins and mapping of IgE epitopes

Sudipto Saha et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Biochemistry & Molecular Biology

JCat:: a novel tool to adapt codon usage of a target gene to its potential expression host

A Grote et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Biochemistry & Molecular Biology

VFDB: a reference database for bacterial virulence factors

LH Chen et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Biochemistry & Molecular Biology

Reliable prediction of T-cell epitopes using neural networks with novel sequence representations

M Nielsen et al.

PROTEIN SCIENCE (2003)

Article Multidisciplinary Sciences

Toll-like receptor 4-dependent activation of dendritic cells by β-defensin 2

A Biragyn et al.

SCIENCE (2002)

Article Biochemistry & Molecular Biology

KEGG: Kyoto Encyclopedia of Genes and Genomes

M Kanehisa et al.

NUCLEIC ACIDS RESEARCH (2000)