4.8 Article

scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

Ensembl 2016

Andrew Yates et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Biochemical Research Methods

Higher order methylation features for clustering and prediction in epigenomic studies

Chantriolnt-Andreas Kapourani et al.

BIOINFORMATICS (2016)

Article Biochemical Research Methods

Diffusion pseudotime robustly reconstructs lineage branching

Laleh Haghverdi et al.

NATURE METHODS (2016)

Article Biochemical Research Methods

Parallel single-cell sequencing links transcriptional and epigenetic heterogeneity

Christof Angermueller et al.

NATURE METHODS (2016)

Article Biochemical Research Methods

Separation and parallel sequencing of the genomes and transcriptomes of single cells using G&T-seq

Iain C. Macaulay et al.

NATURE PROTOCOLS (2016)

Article Biotechnology & Applied Microbiology

Single-cell epigenomics: powerful new methods for understanding gene regulation and cell identity

Stephen J. Clark et al.

GENOME BIOLOGY (2016)

Article Multidisciplinary Sciences

Single-cell chromatin accessibility reveals principles of regulatory variation

Jason D. Buenostro et al.

NATURE (2015)

Article Biochemical Research Methods

HISAT: a fast spliced aligner with low memory requirements

Daehwan Kim et al.

NATURE METHODS (2015)

Article Biochemical Research Methods

G&T-seq: parallel sequencing of single-cell genomes and transcriptomes

Iain C. Macaulay et al.

NATURE METHODS (2015)

Article Biotechnology & Applied Microbiology

ZIFA: Dimensionality reduction for zero-inflated single-cell gene expression analysis

Emma Pierson et al.

GENOME BIOLOGY (2015)

Article Biochemical Research Methods

Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity

Sebastien A. Smallwood et al.

NATURE METHODS (2014)

Article Biochemical Research Methods

Full-length RNA-seq from single cells using Smart-seq2

Simone Picelli et al.

NATURE PROTOCOLS (2014)

Article Biochemistry & Molecular Biology

Dynamic DNA methylation across diverse human cell lines and tissues

Katherine E. Varley et al.

GENOME RESEARCH (2013)

Article Biochemical Research Methods

Smart-seq2 for sensitive full-length transcriptome profiling in single cells

Simone Picelli et al.

NATURE METHODS (2013)

Article Biochemistry & Molecular Biology

Genome-wide mapping of nucleosome positioning and DNA methylation within individual DNA molecules

Theresa K. Kelly et al.

GENOME RESEARCH (2012)

Article Multidisciplinary Sciences

DNase I sensitivity QTLs are a major determinant of human expression variation

Jacob F. Degner et al.

NATURE (2012)

Article Multidisciplinary Sciences

An integrated encyclopedia of DNA elements in the human genome

Ian Dunham et al.

NATURE (2012)

Article Multidisciplinary Sciences

The accessible chromatin landscape of the human genome

Robert E. Thurman et al.

NATURE (2012)

Article Biochemical Research Methods

Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications

Felix Krueger et al.

BIOINFORMATICS (2011)

Article Multidisciplinary Sciences

Independent filtering increases detection power for high-throughput experiments

Richard Bourgon et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Biochemistry & Molecular Biology

A Unifying Model for the Selective Regulation of Inducible Transcription by CpG Islands and Nucleosome Remodeling

Vladimir R. Ramirez-Carrozzi et al.

Article Multidisciplinary Sciences

Human DNA methylomes at base resolution show widespread epigenomic differences

Ryan Lister et al.

NATURE (2009)