4.6 Article

Accurate Segmentation of Cervical Cytoplasm and Nuclei Based on Multiscale Convolutional Network and Graph Partitioning

Journal

IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING
Volume 62, Issue 10, Pages 2421-2433

Publisher

IEEE-INST ELECTRICAL ELECTRONICS ENGINEERS INC
DOI: 10.1109/TBME.2015.2430895

Keywords

Cervical segmentation; coarse to fine; graph partitioning; multiscale convolutional network (MSCN); touching-cell splitting

Funding

  1. National Natural Science Foundation of China [61402296, 61101026, 61372006, 81270707, 61427806]
  2. 48th Scientific Research Foundation for the Returned Overseas Chinese Scholars
  3. National Natural Science Foundation of Guangdong Province [S2013040014448]
  4. Shenzhen Key Basic Research Project [JCYJ20130329105033277, JCYJ20140509172609164]
  5. Shenzhen-Hong Kong Innovation Circle Funding Program [JSE201109150013A]

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In this paper, a multiscale convolutional network (MSCN) and graph-partitioning-based method is proposed for accurate segmentation of cervical cytoplasm and nuclei. Specifically, deep learning via the MSCN is explored to extract scale invariant features, and then, segment regions centered at each pixel. The coarse segmentation is refined by an automated graph partitioning method based on the pretrained feature. The texture, shape, and contextual information of the target objects are learned to localize the appearance of distinctive boundary, which is also explored to generate markers to split the touching nuclei. For further refinement of the segmentation, a coarse-to-fine nucleus segmentation framework is developed. The computational complexity of the segmentation is reduced by using superpixel instead of raw pixels. Extensive experimental results demonstrate that the proposed cervical nucleus cell segmentation delivers promising results and outperforms existing methods.

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