Related references
Note: Only part of the references are listed.Genome-wide repeat dynamics reflect phylogenetic distance in closely related allotetraploid Nicotiana (Solanaceae)
Steven Dodsworth et al.
PLANT SYSTEMATICS AND EVOLUTION (2017)
StarBEAST2 Brings Faster Species Tree Inference and Accurate Estimates of Substitution Rates
Huw A. Ogilvie et al.
MOLECULAR BIOLOGY AND EVOLUTION (2017)
Has the connection between polyploidy and diversification actually been tested?
Elizabeth A. Kellogg
CURRENT OPINION IN PLANT BIOLOGY (2016)
Multiple Polyploidization Events across Asteraceae with Two Nested Events in the Early History Revealed by Nuclear Phylogenomics
Chien-Hsun Huang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2016)
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets
Sudhir Kumar et al.
MOLECULAR BIOLOGY AND EVOLUTION (2016)
The Impact of Reconstruction Methods, Phylogenetic Uncertainty and Branch Lengths on Inference of Chromosome Number Evolution in American Daisies (Melampodium, Asteraceae)
Jamie McCann et al.
PLOS ONE (2016)
The wondrous cycles of polyploidy in plants
Jonathan F. Wendel
AMERICAN JOURNAL OF BOTANY (2015)
Genome size diversity in angiosperms and its influence on gene space
Steven Dodsworth et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2015)
Formamide-Free Genomic in situ Hybridization Allows Unambiguous Discrimination of Highly Similar Parental Genomes in Diploid Hybrids and Allopolyploids
Tae-Soo Jang et al.
CYTOGENETIC AND GENOME RESEARCH (2015)
Satellite DNA in Plants: More than Just Rubbish
Manuel A. Garrido-Ramos
CYTOGENETIC AND GENOME RESEARCH (2015)
Analysis of the giant genomes of Fritillaria (Liliaceae) indicates that a lack of DNA removal characterizes extreme expansions in genome size
Laura J. Kelly et al.
NEW PHYTOLOGIST (2015)
Assignment of Homoeologs to Parental Genomes in Allopolyploids for Species Tree Inference, with an Example from Fumaria (Papaveraceae)
Yann J. K. Bertrand et al.
SYSTEMATIC BIOLOGY (2015)
Patterns of chromosomal variation in natural populations of the neoallotetraploid Tragopogon mirus (Asteraceae)
M. Chester et al.
HEREDITY (2015)
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
Lam-Tung Nguyen et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
Polyploidy: adaptation to the genomic environment
Jesse D. Hollister
NEW PHYTOLOGIST (2015)
In Depth Characterization of Repetitive DNA in 23 Plant Genomes Reveals Sources of Genome Size Variation in the Legume Tribe Fabeae
Jiri Macas et al.
PLOS ONE (2015)
From Gene Trees to a Dated Allopolyploid Network: Insights from the Angiosperm Genus Viola (Violaceae)
Thomas Marcussen et al.
SYSTEMATIC BIOLOGY (2015)
The Contributions of Transposable Elements to the Structure, Function, and Evolution of Plant Genomes
Jeffrey L. Bennetzen et al.
ANNUAL REVIEW OF PLANT BIOLOGY, VOL 65 (2014)
The widespread crucifer species Cardamine flexuosa is an allotetraploid with a conserved subgenomic structure
Terezie Mandakova et al.
NEW PHYTOLOGIST (2014)
When fathers are instant losers: homogenization of rDNA loci in recently formed Cardamine X schulzii trigenomic allopolyploid
Judita Zozomova-Lihova et al.
NEW PHYTOLOGIST (2014)
RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads
Petr Novak et al.
BIOINFORMATICS (2013)
Evolutionary Consequences, Constraints and Potential of Polyploidy in Plants
H. Weiss-Schneeweiss et al.
CYTOGENETIC AND GENOME RESEARCH (2013)
Polyploidy and its effect on evolutionary success: old questions revisited with new tools
A. Madlung
HEREDITY (2013)
Accurate Model Selection of Relaxed Molecular Clocks in Bayesian Phylogenetics
Guy Baele et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
The More the Merrier: Recent Hybridization and Polyploidy in Cardamine
Terezie Mandakova et al.
PLANT CELL (2013)
Diploidization and genome size change in allopolyploids is associated with differential dynamics of low- and high-copy sequences
Simon Renny-Byfield et al.
PLANT JOURNAL (2013)
Primary endosymbiosis events date to the later Proterozoic with cross-calibrated phylogenetic dating of duplicated ATPase proteins
Patrick M. Shih et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Statistical Inference of Allopolyploid Species Networks in the Presence of Incomplete Lineage Sorting
Graham Jones et al.
SYSTEMATIC BIOLOGY (2013)
THE PROMISCUOUS AND THE CHASTE: FREQUENT ALLOPOLYPLOID SPECIATION AND ITS GENOMIC CONSEQUENCES IN AMERICAN DAISIES (MELAMPODIUM SECT. MELAMPODIUM; ASTERACEAE)
Hanna Weiss-Schneeweiss et al.
EVOLUTION (2012)
Improving the Accuracy of Demographic and Molecular Clock Model Comparison While Accommodating Phylogenetic Uncertainty
Guy Baele et al.
MOLECULAR BIOLOGY AND EVOLUTION (2012)
Independent, Rapid and Targeted Loss of Highly Repetitive DNA in Natural and Synthetic Allopolyploids of Nicotiana tabacum
Simon Renny-Byfield et al.
PLOS ONE (2012)
Extensive chromosomal variation in a recently formed natural allopolyploid species, Tragopogon miscellus (Asteraceae)
Michael Chester et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Inferring Species Networks from Gene Trees in High-Polyploid North American and Hawaiian Violets (Viola, Violaceae)
Thomas Marcussen et al.
SYSTEMATIC BIOLOGY (2012)
BEAGLE: An Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics
Daniel L. Ayres et al.
SYSTEMATIC BIOLOGY (2012)
Next Generation Sequencing Reveals Genome Downsizing in Allotetraploid Nicotiana tabacum, Predominantly through the Elimination of Paternally Derived Repetitive DNAs
Simon Renny-Byfield et al.
MOLECULAR BIOLOGY AND EVOLUTION (2011)
Ancestral polyploidy in seed plants and angiosperms
Yuannian Jiao et al.
NATURE (2011)
Recently Formed Polyploid Plants Diversify at Lower Rates
Itay Mayrose et al.
SCIENCE (2011)
Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data
Petr Novak et al.
BMC BIOINFORMATICS (2010)
Homeolog loss and expression changes in natural populations of the recently and repeatedly formed allotetraploid Tragopogon mirus (Asteraceae)
Jin Koh et al.
BMC GENOMICS (2010)
Bayesian Inference of Species Trees from Multilocus Data
Joseph Heled et al.
MOLECULAR BIOLOGY AND EVOLUTION (2010)
Dating the origins of polyploidy events
Jeff J. Doyle et al.
NEW PHYTOLOGIST (2010)
Adding time-calibrated branch lengths to the Asteraceae supertree
Ruben Torices
JOURNAL OF SYSTEMATICS AND EVOLUTION (2010)
The Dynamic Ups and Downs of Genome Size Evolution in Brassicaceae
Martin A. Lysak et al.
MOLECULAR BIOLOGY AND EVOLUTION (2009)
Molecular phylogenetic analyses of nuclear and plastid DNA sequences support dysploid and polyploid chromosome number changes and reticulate evolution in the diversification of Melampodium (Millerieae, Asteraceae)
Cordula Bloech et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2009)
The frequency of polyploid speciation in vascular plants
Troy E. Wood et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Rapid DNA loss as a counterbalance to genome expansion through retrotransposon proliferation in plants
Jennifer S. Hawkins et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Evolution of rDNA in Nicotiana allopolyploids:: A potential link between rDNA homogenization and epigenetics
Ales Kovarik et al.
ANNALS OF BOTANY (2008)
PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationships
Cuong Than et al.
BMC BIOINFORMATICS (2008)
Sequence of events leading to near-complete genome turnover in allopolyploid Nicotiana within five million years
K. Yoong Lim et al.
NEW PHYTOLOGIST (2007)
Relaxed phylogenetics and dating with confidence
Alexei J. Drummond et al.
PLOS BIOLOGY (2006)
A survey of nuclear ribosomal internal transcribed spacer substitution rates across angiosperms: an approximate molecular clock with life history effects
Kathleen M. Kay et al.
BMC EVOLUTIONARY BIOLOGY (2006)
The advantages and disadvantages of being polyploid
L Comai
NATURE REVIEWS GENETICS (2005)
Two chloroplast DNA inversions originated simultaneously during the early evolution of the sunflower family (Asteraceae)
KJ Kim et al.
MOLECULAR BIOLOGY AND EVOLUTION (2005)
Genome evolution of allopolyploids: a process of cytological and genetic diploidization
XF Ma et al.
CYTOGENETIC AND GENOME RESEARCH (2005)
MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
NUCLEIC ACIDS RESEARCH (2004)
Polyploidy in arctic plants
C Brochmann et al.
BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY (2004)
Genome downsizing in polyploid plants
IJ Leitch et al.
BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY (2004)
PlantSat: a specialized database for plant satellite repeats
J Macas et al.
BIOINFORMATICS (2002)
Yesterday's polyploids and the mystery of diploidization
KH Wolfe
NATURE REVIEWS GENETICS (2001)
Records of Late Pleistocene-Holocene climatic change in Mexico - a review
SE Metcalfe et al.
QUATERNARY SCIENCE REVIEWS (2000)