4.7 Review

Species distribution modeling: a statistical review with focus in spatio-temporal issues

Related references

Note: Only part of the references are listed.
Article Computer Science, Theory & Methods

Markov chain Monte Carlo with the Integrated Nested Laplace Approximation

Virgilio Gomez-Rubio et al.

STATISTICS AND COMPUTING (2018)

Article Engineering, Environmental

Spatiotemporal modeling of relative risk of dengue disease in Colombia

Daniel Martinez-Bello et al.

STOCHASTIC ENVIRONMENTAL RESEARCH AND RISK ASSESSMENT (2018)

Article Engineering, Environmental

Hierarchical spatial modeling of the presence of Chagas disease insect vectors in Argentina. A comparative approach

Pablo Juan et al.

STOCHASTIC ENVIRONMENTAL RESEARCH AND RISK ASSESSMENT (2017)

Editorial Material Ecology

Faster estimation of Bayesian models in ecology using Hamiltonian Monte Carlo

Cole C. Monnahan et al.

METHODS IN ECOLOGY AND EVOLUTION (2017)

Article Mathematics, Interdisciplinary Applications

Bayesian Computing with INLA: A Review

Håvard Rue et al.

Annual Review of Statistics and Its Application (2017)

Article Geosciences, Multidisciplinary

Dynamic spatio-temporal models for spatial data

Trevor J. Hefley et al.

SPATIAL STATISTICS (2017)

Article Geosciences, Multidisciplinary

Spatio-Temporal model structures with shared components for semi-continuous species distribution modelling

Iosu Paradinas et al.

SPATIAL STATISTICS (2017)

Article Computer Science, Information Systems

Development and Comparison of Species Distribution Models for Forest Inventories

Oscar Rodriguez de Rivera et al.

ISPRS INTERNATIONAL JOURNAL OF GEO-INFORMATION (2017)

Article Mathematics, Interdisciplinary Applications

Joint Species Distribution Modeling: Dimension Reduction Using Dirichlet Processes

Daniel Taylor-Rodriguez et al.

BAYESIAN ANALYSIS (2017)

Article Oceanography

Habitat modeling for cetacean management: Spatial distribution in the southern Pelagos Sanctuary (Mediterranean Sea)

Maria Grazia Pennino et al.

DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY (2017)

Article Biodiversity Conservation

Modelling the spread and control of Xylella fastidiosa in the early stages of invasion in Apulia, Italy

Steven M. White et al.

BIOLOGICAL INVASIONS (2017)

Article Ecology

Bayesian spatial predictive models for data-poor fisheries

Marie-Christine Rufener et al.

ECOLOGICAL MODELLING (2017)

Article Computer Science, Interdisciplinary Applications

Model-based simultaneous clustering and ordination of multivariate abundance data in ecology

Francis K. C. Hui

COMPUTATIONAL STATISTICS & DATA ANALYSIS (2017)

Article Health Care Sciences & Services

Modelling the presence of disease under spatial misalignment using Bayesian latent Gaussian models

Xavier Barber et al.

GEOSPATIAL HEALTH (2016)

Article Biodiversity Conservation

Ecological and methodological drivers of species' distribution and phenology responses to climate change

Christopher J. Brown et al.

GLOBAL CHANGE BIOLOGY (2016)

Article Fisheries

Identifying the best fishing-suitable areas under the new European discard ban

Iosu Paradinas et al.

ICES JOURNAL OF MARINE SCIENCE (2016)

Article Fisheries

Fishery-dependent and -independent data lead to consistent estimations of essential habitats

Maria Grazia Pennino et al.

ICES JOURNAL OF MARINE SCIENCE (2016)

Article Public, Environmental & Occupational Health

Species Distribution Modelling of Aedes aegypti in two dengue-endemic regions of Pakistan

Syeda Hira Fatima et al.

TROPICAL MEDICINE & INTERNATIONAL HEALTH (2016)

Article Ecology

Fast and flexible Bayesian species distribution modelling using Gaussian processes

Nick Golding et al.

METHODS IN ECOLOGY AND EVOLUTION (2016)

Article Geosciences, Multidisciplinary

A spatial-temporal double-hurdle model for extremely over-dispersed avian count data

Earvin Balderama et al.

SPATIAL STATISTICS (2016)

Article Fisheries

Applying Bayesian spatiotemporal models to fisheries bycatch in the Canadian Arctic

Aurelie Cosandey-Godin et al.

CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES (2015)

Article Computer Science, Interdisciplinary Applications

Bayesian Spatial Modelling with R-INLA

Finn Lindgren et al.

JOURNAL OF STATISTICAL SOFTWARE (2015)

Article Statistics & Probability

Model-Based Geostatistics the Easy Way

Patrick E. Brown

Journal of Statistical Software (2015)

Article Ecology

Bayesian spatio-temporal approach to identifying fish nurseries by validating persistence areas

Iosu Paradinas et al.

MARINE ECOLOGY PROGRESS SERIES (2015)

Article Environmental Sciences

Modeling sensitive parrotfish (Labridae: Scarini) habitats along the Brazilian coast

Natalia C. Roos et al.

MARINE ENVIRONMENTAL RESEARCH (2015)

Article Ecology

Bayesian spatio-temporal approach to identifying fish nurseries by validating persistence areas

Iosu Paradinas et al.

MARINE ECOLOGY PROGRESS SERIES (2015)

Article Computer Science, Information Systems

Exploring Spatial Scale, Autocorrelation and Nonstationarity of Bird Species Richness Patterns

Paul Holloway et al.

ISPRS INTERNATIONAL JOURNAL OF GEO-INFORMATION (2015)

Article Statistics & Probability

Bayesian analysis of measurement error models using integrated nested Laplace approximations

Stefanie Muff et al.

JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES C-APPLIED STATISTICS (2015)

Article Ecology

A climate of uncertainty: accounting for error in climate variables for species distribution models

Jakub Stoklosa et al.

METHODS IN ECOLOGY AND EVOLUTION (2015)

Article Ecology

Will remote sensing shape the next generation of species distribution models?

Kate S. He et al.

REMOTE SENSING IN ECOLOGY AND CONSERVATION (2015)

Article Marine & Freshwater Biology

Bayesian spatio-temporal discard model in a demersal trawl fishery

M. Grazia Pennino et al.

JOURNAL OF SEA RESEARCH (2014)

Article Biochemical Research Methods

Bayesian Analysis for Inference of an Emerging Epidemic: Citrus Canker in Urban Landscapes

Franco M. Neri et al.

PLOS COMPUTATIONAL BIOLOGY (2014)

Article Geosciences, Multidisciplinary

Spatial models with explanatory variables in the dependence structure

Rikke Ingebrigtsen et al.

SPATIAL STATISTICS (2014)

Article Statistics & Probability

Spatio-temporal modeling of particulate matter concentration through the SPDE approach

Michela Cameletti et al.

ASTA-ADVANCES IN STATISTICAL ANALYSIS (2013)

Article Computer Science, Interdisciplinary Applications

Bayesian computing with INLA: New features

Thiago G. Martins et al.

COMPUTATIONAL STATISTICS & DATA ANALYSIS (2013)

Article Ecology

Spatial occupancy models for large data sets

Devin S. Johnson et al.

ECOLOGY (2013)

Article Ecology

MARSPEC: ocean climate layers for marine spatial ecology

Elizabeth J. Sbrocco et al.

ECOLOGY (2013)

Article Marine & Freshwater Biology

Modeling sensitive elasmobranch habitats

M. Grazia Pennino et al.

JOURNAL OF SEA RESEARCH (2013)

Article Social Sciences, Mathematical Methods

A spatial Poisson hurdle model for exploring geographic variation in emergency department visits

Brian Neelon et al.

JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES A-STATISTICS IN SOCIETY (2013)

Article Statistics & Probability

Discussing the big n problem

Giovanna Jona Lasinio et al.

STATISTICAL METHODS AND APPLICATIONS (2013)

Article Engineering, Environmental

Estimation and prediction of the spatial occurrence of fish species using Bayesian latent Gaussian models

Facundo Munoz et al.

STOCHASTIC ENVIRONMENTAL RESEARCH AND RISK ASSESSMENT (2013)

Article Infectious Diseases

Bayesian Geostatistical Modeling of Leishmaniasis Incidence in Brazil

Dimitrios-Alexios Karagiannis-Voules et al.

PLOS NEGLECTED TROPICAL DISEASES (2013)

Review Public, Environmental & Occupational Health

Spatial and spatio-temporal models with R-INLA

Marta Blangiardo et al.

SPATIAL AND SPATIO-TEMPORAL EPIDEMIOLOGY (2013)

Article Statistics & Probability

A TOOLBOX FOR FITTING COMPLEX SPATIAL POINT PROCESS MODELS USING INTEGRATED NESTED LAPLACE APPROXIMATION (INLA)

Janine B. Illian et al.

ANNALS OF APPLIED STATISTICS (2012)

Article Computer Science, Interdisciplinary Applications

Direct fitting of dynamic models using integrated nested Laplace approximations - INLA

Ramiro Ruiz-Cardenas et al.

COMPUTATIONAL STATISTICS & DATA ANALYSIS (2012)

Article Statistics & Probability

Uncertainty in spatially predicted covariates: is it ignorable?

Scott D. Foster et al.

JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES C-APPLIED STATISTICS (2012)

Article Geography, Physical

Species distribution models: Spatial autocorrelation and non-stationarity

Jennifer A. Miller

PROGRESS IN PHYSICAL GEOGRAPHY-EARTH AND ENVIRONMENT (2012)

Article Meteorology & Atmospheric Sciences

Spatio-temporal prediction of daily temperatures using time-series of MODIS LST images

Tomislav Hengl et al.

THEORETICAL AND APPLIED CLIMATOLOGY (2012)

Article Ecology

Selecting pseudo-absences for species distribution models: how, where and how many?

Morgane Barbet-Massin et al.

METHODS IN ECOLOGY AND EVOLUTION (2012)

Article Environmental Sciences

Comparing spatio-temporal models for particulate matter in Piemonte

Michela Cameletti et al.

ENVIRONMETRICS (2011)

Article Statistics & Probability

An explicit link between Gaussian fields and Gaussian Markov random fields: the stochastic partial differential equation approach

Finn Lindgren et al.

JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY (2011)

Article Statistics & Probability

Using integrated nested Laplace approximations for the evaluation of veterinary surveillance data from Switzerland: a case-study

Birgit Schroedle et al.

JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES C-APPLIED STATISTICS (2011)

Article Statistics & Probability

A Short History of Markov Chain Monte Carlo: Subjective Recollections from Incomplete Data

Christian Robert et al.

STATISTICAL SCIENCE (2011)

Article Engineering, Environmental

Analyze the risks of biological invasion

Meifeng Luo et al.

STOCHASTIC ENVIRONMENTAL RESEARCH AND RISK ASSESSMENT (2011)

Review Ecology

Regression analysis of spatial data

Colin M. Beale et al.

ECOLOGY LETTERS (2010)

Article Statistics & Probability

Geostatistical inference under preferential sampling

Peter J. Diggle et al.

JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES C-APPLIED STATISTICS (2010)

Article Statistics & Probability

A general science-based framework for dynamical spatio-temporal models

Christopher K. Wikle et al.

Review Ecology

Species Distribution Models: Ecological Explanation and Prediction Across Space and Time

Jane Elith et al.

ANNUAL REVIEW OF ECOLOGY EVOLUTION AND SYSTEMATICS (2009)

Review Statistics & Probability

Approximate Bayesian inference for latent Gaussian models by using integrated nested Laplace approximations

Havard Rue et al.

JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY (2009)

Article Mathematical & Computational Biology

The BUGS project: Evolution, critique and future directions

David Lunn et al.

STATISTICS IN MEDICINE (2009)

Article Environmental Sciences

Spatial smoothing techniques for the assessment of habitat suitability

Thomas Kneib et al.

ENVIRONMENTAL AND ECOLOGICAL STATISTICS (2008)

Article Statistics & Probability

On the Second-Order Random Walk Model for Irregular Locations

Finn Lindgren et al.

SCANDINAVIAN JOURNAL OF STATISTICS (2008)

Review Ecology

Integrating GIS-based environmental data into evolutionary biology

Kenneth H. Kozak et al.

TRENDS IN ECOLOGY & EVOLUTION (2008)

Article Engineering, Environmental

Recognizing spatial distribution patterns of grassland insects: neural network approaches

WenJun Zhang et al.

STOCHASTIC ENVIRONMENTAL RESEARCH AND RISK ASSESSMENT (2008)

Article Environmental Studies

Spatial-filtering-based contributions to a critique of geographically weighted regression (GWR)

Daniel A. Griffith

ENVIRONMENT AND PLANNING A-ECONOMY AND SPACE (2008)

Article Engineering, Environmental

Supervised neural network recognition of habitat zones of rice invertebrates

WenJun Zhang

STOCHASTIC ENVIRONMENTAL RESEARCH AND RISK ASSESSMENT (2007)

Article Environmental Sciences

Space-time zero-inflated count models of Harbor seals

Jay M. Ver Hoef et al.

ENVIRONMETRICS (2007)

Article Biodiversity Conservation

Presence-absence versus abundance data for monitoring threatened species

Liana N. Joseph et al.

CONSERVATION BIOLOGY (2006)

Article Health Care Sciences & Services

Bayesian modelling of geostatistical malaria risk data

L. Gosoniu et al.

GEOSPATIAL HEALTH (2006)

Article Biodiversity Conservation

Ecological niche modelling and prioritizing areas for species reintroductions

Enrique Martinez-Meyer et al.

Article Meteorology & Atmospheric Sciences

Guidelines for assessing the suitability of spatial climate data sets

Christopher Daly

INTERNATIONAL JOURNAL OF CLIMATOLOGY (2006)

Article Ecology

Building statistical models to analyze species distributions

AM Latimer et al.

ECOLOGICAL APPLICATIONS (2006)

Article Ecology

Maximum entropy modeling of species geographic distributions

SJ Phillips et al.

ECOLOGICAL MODELLING (2006)

Article Mathematics, Interdisciplinary Applications

Explaining Species Distribution Patterns through Hierarchical Modeling

Alan E. Gelfand et al.

BAYESIAN ANALYSIS (2006)

Article Meteorology & Atmospheric Sciences

Very high resolution interpolated climate surfaces for global land areas

RJ Hijmans et al.

INTERNATIONAL JOURNAL OF CLIMATOLOGY (2005)

Article Biodiversity Conservation

Validation of species-climate impact models under climate change

MB Araújo et al.

GLOBAL CHANGE BIOLOGY (2005)

Article Economics

An alternative to maximum likelihood based on spacings

S Anatolyev et al.

ECONOMETRIC THEORY (2005)

Article Biodiversity Conservation

Absent or undetected? Effects of non-detection of species occurrence on wildlife-habitat models

WD Gu et al.

BIOLOGICAL CONSERVATION (2004)

Article Statistics & Probability

Beta regression for modelling rates and proportions

SLP Ferrari et al.

JOURNAL OF APPLIED STATISTICS (2004)

Article Statistics & Probability

Spatial modeling with spatially varying coefficient processes

AE Gelfand et al.

JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION (2003)

Article Mathematical & Computational Biology

Zero-inflated negative binomial mixed regression modeling of over-dispersed count data with extra zeros

KKW Yau et al.

BIOMETRICAL JOURNAL (2003)

Article Environmental Sciences

Zero-inflated models with application to spatial count data

DK Agarwal et al.

ENVIRONMENTAL AND ECOLOGICAL STATISTICS (2002)

Article Remote Sensing

Using GIS to predict potential wildlife habitat: a case study of muskoxen in northern Alaska

FS Danks et al.

INTERNATIONAL JOURNAL OF REMOTE SENSING (2002)

Article Immunology

Ecologic niche modeling and potential reservoirs for Chagas disease, Mexico

AT Peterson et al.

EMERGING INFECTIOUS DISEASES (2002)

Article Environmental Sciences

A high-resolution data set of surface climate over global land areas

M New et al.

CLIMATE RESEARCH (2002)

Article Computer Science, Theory & Methods

WinBUGS - A Bayesian modelling framework: Concepts, structure, and extensibility

DJ Lunn et al.

STATISTICS AND COMPUTING (2000)

Article Statistics & Probability

On the asymptotics of constrained local M-estimators

A Shapiro

ANNALS OF STATISTICS (2000)