Journal
SCIENCE
Volume 359, Issue 6381, Pages 1274-+Publisher
AMER ASSOC ADVANCEMENT SCIENCE
DOI: 10.1126/science.aao6891
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Funding
- JPB Foundation
- NIH [R01 DK45586, P30 DK19525, R01 DK106027, T32 GM007170, T32 GM008216, F30 DK112507]
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Mammalian physiology exhibits 24-hour cyclicity due to circadian rhythms of gene expression controlled by transcription factors that constitute molecular clocks. Core clock transcription factors bind to the genome at enhancer sequences to regulate circadian gene expression, but not all binding sites are equally functional. We found that in mice, circadian gene expression in the liver is controlled by rhythmic chromatin interactions between enhancers and promoters. Rev-erb alpha, a core repressive transcription factor of the clock, opposes functional loop formation between Rev-erb alpha-regulated enhancers and circadian target gene promoters by recruitment of the NCoR-HDAC3 co-repressor complex, histone deacetylation, and eviction of the elongation factor BRD4 and the looping factor MED1. Thus, a repressive arm of the molecular clock operates by rhythmically modulating chromatin loops to control circadian gene transcription.
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