Journal
NUCLEIC ACIDS RESEARCH
Volume 46, Issue W1, Pages W510-W513Publisher
OXFORD UNIV PRESS
DOI: 10.1093/nar/gky299
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Funding
- European Molecular Biology Laboratory (EMBL)
- European Research Council Microbios [ERC-AdG-669830]
- European Commission MetaCardis project [FP7-HEALTH-2012-INNOVATION-I-305312]
- European Union Horizon 2020 research and innovation programme [686070]
- Japan Science and Technology Agency PRESTO [JPMJPR1507]
- Japan Agency for Medical Research and Development (AMED) [17ek0109187h0002]
- Tokyo Institute of Technology
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iPath3.0 (http://pathways.embl.de) is a web-application for the visualization and analysis of cellular pathways. It is freely available and open to everyone. Currently it is based on four KEGG global maps, which summarize up to 158 traditional KEGG pathway maps, 192 KEGG modules and other metabolic elements into one connected and manually curated metabolic network. Users can fully customize these networks and interactively explore them through its redesigned, fast and lightweight interface, which highlights general metabolic trends in multi-omics data. It also offers navigation at various levels of details to help users further investigate those trends and ultimately uncover novel biological insights. Support for multiple experimental conditions and time-series datasets, tools for generation of customization data, programmatic access, and a free user accounts system were introduced in this version to further streamline its workflow.
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