Related references
Note: Only part of the references are listed.RNA-Seq Analyses Identify Frequent Allele Specific Expression and No Evidence of Genomic Imprinting in Specific Embryonic Tissues of Chicken
Zhu Zhuo et al.
SCIENTIFIC REPORTS (2017)
Compensatory Drift and the Evolutionary Dynamics of Dosage-Sensitive Duplicate Genes
Ammon Thompson et al.
GENETICS (2016)
Genomic Landscape of Long Terminal Repeat Retrotransposons (LTR-RTs) and Solo LTRs as Shaped by Ectopic Recombination in Chicken and Zebra Finch
Yanzhu Ji et al.
JOURNAL OF MOLECULAR EVOLUTION (2016)
Contrasting Frequencies and Effects of cis- and trans-Regulatory Mutations Affecting Gene Expression
Brian P. H. Metzger et al.
MOLECULAR BIOLOGY AND EVOLUTION (2016)
Genomic signature of successful colonization of Eurasia by the allopolyploid shepherd's purse (Capsella bursa-pastoris)
A. Cornille et al.
MOLECULAR ECOLOGY (2016)
The influence of population structure on gene expression and flowering time variation in the ubiquitous weed Capsella bursa-pastoris (Brassicaceae)
Dmytro Kryvokhyzha et al.
MOLECULAR ECOLOGY (2016)
Maintenance and Loss of Duplicated Genes by Dosage Subfunctionalization
Jean-Francois Gout et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
A Solution to the C-Value Paradox and the Function of Junk DNA: The Genome Balance Hypothesis
Michael Freeling et al.
MOLECULAR PLANT (2015)
Hybrid origins and the earliest stages of diploidization in the highly successful recent polyploid Capsella bursa-pastoris
Gavin M. Douglas et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
HTSeq-a Python framework to work with high-throughput sequencing data
Simon Anders et al.
BIOINFORMATICS (2015)
THE POLYPLOIDY REVOLUTION THEN...AND NOW: STEBBINS REVISITED
Douglas E. Soltis et al.
AMERICAN JOURNAL OF BOTANY (2014)
SNPhylo: a pipeline to construct a phylogenetic tree from huge SNP data
Tae-Ho Lee et al.
BMC GENOMICS (2014)
fastSTRUCTURE: Variational Inference of Population Structure in Large SNP Data Sets
Anil Raj et al.
GENETICS (2014)
Expression Evolution Facilitated the Convergent Neofunctionalization of a Sodium Channel Gene
Ammon Thompson et al.
MOLECULAR BIOLOGY AND EVOLUTION (2014)
Genome-wide quantification of homeolog expression ratio revealed nonstochastic gene regulation in synthetic allopolyploid Arabidopsis
Satoru Akama et al.
NUCLEIC ACIDS RESEARCH (2014)
Origin, inheritance, and gene regulatory consequences of genome dominance in polyploids
Margaret R. Woodhouse et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
STAR: ultrafast universal RNA-seq aligner
Alexander Dobin et al.
BIOINFORMATICS (2013)
Inheritance of Gene Expression Level and Selective Constraints on Trans- and Cis-Regulatory Changes in Yeast
Bernhard Schaefke et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
The Capsella rubella genome and the genomic consequences of rapid mating system evolution
Tanja Slotte et al.
NATURE GENETICS (2013)
Convergent gene loss following gene and genome duplications creates single-copy families in flowering plants
Riet De Smet et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
'Missing link' species Capsella orientalis and Capsella thracica elucidate evolution of model plant genus Capsella (Brassicaceae)
Herbert Hurka et al.
MOLECULAR ECOLOGY (2012)
Flowering time and transcriptome variation in Capsella bursa-pastoris (Brassicaceae)
Hui-Run Huang et al.
NEW PHYTOLOGIST (2012)
The variant call format and VCFtools
Petr Danecek et al.
BIOINFORMATICS (2011)
Quantification and statistical significance analysis of group separation in NMR-based metabonomics studies
Aaron M. Goodpaster et al.
CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS (2011)
COMPARATIVE EVIDENCE FOR THE CORRELATED EVOLUTION OF POLYPLOIDY AND SELF-COMPATIBILITY IN SOLANACEAE
Kelly Robertson et al.
EVOLUTION (2011)
Regulatory divergence in Drosophila revealed by mRNA-seq
C. Joel McManus et al.
GENOME RESEARCH (2010)
Natural selection on cis and trans regulation in yeasts
J. J. Emerson et al.
GENOME RESEARCH (2010)
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
Aaron McKenna et al.
GENOME RESEARCH (2010)
Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows
Laurent Excoffier et al.
MOLECULAR ECOLOGY RESOURCES (2010)
The gene balance hypothesis: implications for gene regulation, quantitative traits and evolution
James A. Birchler et al.
NEW PHYTOLOGIST (2010)
The genetic basis of evolutionary change in gene expression levels
J. J. Emerson et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2010)
Sequencing of 50 Human Exomes Reveals Adaptation to High Altitude
Xin Yi et al.
SCIENCE (2010)
Differential expression analysis for sequence count data
Simon Anders et al.
GENOME BIOLOGY (2010)
ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks
Gabriela Bindea et al.
BIOINFORMATICS (2009)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
Splicing Variation at a FLOWERING LOCUS C Homeolog Is Associated With Flowering Time Variation in the Tetraploid Capsella bursa-pastoris
Tanja Slotte et al.
GENETICS (2009)
Mating consequences of polyploid evolution in flowering plants: Current trends and insights from synthetic polyploids
Brian C. Husband et al.
INTERNATIONAL JOURNAL OF PLANT SCIENCES (2008)
Regulatory changes underlying expression differences within and between Drosophila species
Patricia J. Wittkopp et al.
NATURE GENETICS (2008)
Genomic sources of regulatory variation in cis and in trans
PJ Wittkopp
CELLULAR AND MOLECULAR LIFE SCIENCES (2005)
DISTRUCT: a program for the graphical display of population structure
NA Rosenberg
MOLECULAR ECOLOGY NOTES (2004)
Evolutionary changes in cis and trans gene regulation
PJ Wittkopp et al.
NATURE (2004)
Polyploidy and self-compatibility: is there an association?
BK Mable
NEW PHYTOLOGIST (2004)
Cytoscape: A software environment for integrated models of biomolecular interaction networks
P Shannon et al.
GENOME RESEARCH (2003)
The evolutionary fate and consequences of duplicate genes
M Lynch et al.
SCIENCE (2000)