Related references
Note: Only part of the references are listed.Deterministic influences exceed dispersal effects on hydrologically-connected microbiomes
Emily B. Graham et al.
ENVIRONMENTAL MICROBIOLOGY (2017)
Where less may be more: how the rare biosphere pulls ecosystems strings
Alexandre Jousset et al.
ISME JOURNAL (2017)
Embracing the unknown: disentangling the complexities of the soil microbiome
Noah Fierer
NATURE REVIEWS MICROBIOLOGY (2017)
Plant cultivars imprint the rhizosphere bacterial community composition and association networks
Yuji Jiang et al.
SOIL BIOLOGY & BIOCHEMISTRY (2017)
Combined use of network inference tools identifies ecologically meaningful bacterial associations in a paddy soil
Honggui Wang et al.
SOIL BIOLOGY & BIOCHEMISTRY (2017)
Microbiome-on-a-Chip: New Frontiers in Plant-Microbiota Research
Claire E. Stanley et al.
TRENDS IN MICROBIOLOGY (2017)
Intestinal microbiome landscaping: insight in community assemblage and implications for microbial modulation strategies
Sudarshan A. Shetty et al.
FEMS MICROBIOLOGY REVIEWS (2017)
Temporal and spatial influences incur reconfiguration of Arctic heathland soil bacterial community structure
Richard Hill et al.
ENVIRONMENTAL MICROBIOLOGY (2016)
Determinants of bacterial communities in Canadian agroforestry systems
Samiran Banerjee et al.
ENVIRONMENTAL MICROBIOLOGY (2016)
Tritagonist as a new term for uncharacterised microorganisms in environmental systems
Florian M. Freimoser et al.
ISME JOURNAL (2016)
Soil C and N as causal factors of spatial variation in extracellular enzyme activity across grassland-woodland ecotones
Samiran Banerjee et al.
APPLIED SOIL ECOLOGY (2016)
Network-based metabolic analysis and microbial community modeling
Cesar Cardona et al.
CURRENT OPINION IN MICROBIOLOGY (2016)
The interconnected rhizosphere: High network complexity dominates rhizosphere assemblages
Shengjing Shi et al.
ECOLOGY LETTERS (2016)
Structure and function of methanogenic microbial communities in sediments of Amazonian lakes with different water types
Yang Ji et al.
ENVIRONMENTAL MICROBIOLOGY (2016)
Structure, Variation, and Co-occurrence of Soil Microbial Communities in Abandoned Sites of a Rare Earth Elements Mine
Yuanqing Chao et al.
ENVIRONMENTAL SCIENCE & TECHNOLOGY (2016)
Correlation detection strategies in microbial data sets vary widely in sensitivity and precision
Sophie Weiss et al.
ISME JOURNAL (2016)
Taxon interactions control the distributions of cryoconite bacteria colonizing a High Arctic ice cap
Jarishma K. Gokul et al.
MOLECULAR ECOLOGY (2016)
Network analysis reveals seasonal variation of co-occurrence correlations between Cyanobacteria and other bacterioplankton
Dayong Zhao et al.
SCIENCE OF THE TOTAL ENVIRONMENT (2016)
Bacterial communities in oil contaminated soils: Biogeography and co-occurrence patterns
Shuo Jiao et al.
SOIL BIOLOGY & BIOCHEMISTRY (2016)
Network analysis reveals functional redundancy and keystone taxa amongst bacterial and fungal communities during organic matter decomposition in an arable soil
Samiran Banerjee et al.
SOIL BIOLOGY & BIOCHEMISTRY (2016)
Dancing with the Stars: How Choreographed Bacterial Interactions Dictate Nososymbiocity and Give Rise to Keystone Pathogens, Accessory Pathogens, and Pathobionts
George Hajishengallis et al.
TRENDS IN MICROBIOLOGY (2016)
Microbial Hub Taxa Link Host and Abiotic Factors to Plant Microbiome Variation
Matthew T. Agler et al.
PLOS BIOLOGY (2016)
Changes in the Structure of the Microbial Community Associated with Nannochloropsis salina following Treatments with Antibiotics and Bioactive Compounds
Haifeng Geng et al.
FRONTIERS IN MICROBIOLOGY (2016)
Co-occurrence patterns in aquatic bacterial communities across changing permafrost landscapes
J. Comte et al.
BIOGEOSCIENCES (2016)
Soil-foraging animals alter the composition and co-occurrence of microbial communities in a desert shrubland
David J. Eldridge et al.
ISME JOURNAL (2015)
Soil organic matter quantity and quality shape microbial community compositions of subtropical broadleaved forests
Junjun Ding et al.
MOLECULAR ECOLOGY (2015)
Bacteriocin production augments niche competition by enterococci in the mammalian gastrointestinal tract
Sushma Kommineni et al.
NATURE (2015)
Marine microbial community dynamics and their ecological interpretation
Jed A. Fuhrman et al.
NATURE REVIEWS MICROBIOLOGY (2015)
Ecology and exploration of the rare biosphere
Michael D. J. Lynch et al.
NATURE REVIEWS MICROBIOLOGY (2015)
The importance of the microbiome of the plant holobiont
Philippe Vandenkoornhuyse et al.
NEW PHYTOLOGIST (2015)
Mycorrhizal ecology and evolution: the past, the present, and the future
Marcel G. A. van der Heijden et al.
NEW PHYTOLOGIST (2015)
Ecology of bacteria in the human gastrointestinal tract-identification of keystone and foundation taxa
Pal Trosvik et al.
MICROBIOME (2015)
Modulation of gut microbiota during probiotic-mediated attenuation of metabolic syndrome in high fat diet-fed mice
Jingjing Wang et al.
ISME JOURNAL (2015)
The Gut Commensal Bacteroides thetaiotaomicron Exacerbates Enteric Infection through Modification of the Metabolic Landscape
Meredith M. Curtis et al.
CELL HOST & MICROBE (2014)
Spatial heterogeneity and co-occurrence patterns of human mucosal-associated intestinal microbiota
Zhigang Zhang et al.
ISME JOURNAL (2014)
Modular community structure suggests metabolic plasticity during the transition to polar night in ice-covered Antarctic lakes
Trista J. Vick-Majors et al.
ISME JOURNAL (2014)
Belowground biodiversity and ecosystem functioning
Richard D. Bardgett et al.
NATURE (2014)
Recently identified microbial guild mediates soil N2O sink capacity
Christopher M. Jones et al.
NATURE CLIMATE CHANGE (2014)
Deciphering microbial interactions and detecting keystone species with co-occurrence networks
David Berry et al.
FRONTIERS IN MICROBIOLOGY (2014)
Network topology reveals high connectance levels and few key microbial genera within soils
Manoeli Lupatini et al.
FRONTIERS IN ENVIRONMENTAL SCIENCE (2014)
Extending the concept of keystone species to communities and ecosystems
Nicolas Mouquet et al.
ECOLOGY LETTERS (2013)
On-chip microbial culture for the specific detection of very low levels of bacteria
Sihem Bouguelia et al.
LAB ON A CHIP (2013)
Molecular ecological network analyses
Ye Deng et al.
BMC BIOINFORMATICS (2012)
Beyond the Venn diagram: the hunt for a core microbiome
Ashley Shade et al.
ENVIRONMENTAL MICROBIOLOGY (2012)
Defining seasonal marine microbial community dynamics
Jack A. Gilbert et al.
ISME JOURNAL (2012)
Using network analysis to explore co-occurrence patterns in soil microbial communities
Albert Barberan et al.
ISME JOURNAL (2012)
Ruminococcus bromii is a keystone species for the degradation of resistant starch in the human colon
Xiaolei Ze et al.
ISME JOURNAL (2012)
The keystone-pathogen hypothesis
George Hajishengallis et al.
NATURE REVIEWS MICROBIOLOGY (2012)
Microbial interactions: from networks to models
Karoline Faust et al.
NATURE REVIEWS MICROBIOLOGY (2012)
The Application of Ecological Theory Toward an Understanding of the Human Microbiome
Elizabeth K. Costello et al.
SCIENCE (2012)
Microbial Co-occurrence Relationships in the Human Microbiome
Karoline Faust et al.
PLOS COMPUTATIONAL BIOLOGY (2012)
Inferring Correlation Networks from Genomic Survey Data
Jonathan Friedman et al.
PLOS COMPUTATIONAL BIOLOGY (2012)
Microbial control over carbon cycling in soil
Joshua P. Schimel et al.
FRONTIERS IN MICROBIOLOGY (2012)
Structural equation modeling in the plant sciences: An example using yield components in oat
Eric G. Lamb et al.
CANADIAN JOURNAL OF PLANT SCIENCE (2011)
Low-Abundance Biofilm Species Orchestrates Inflammatory Periodontal Disease through the Commensal Microbiota and Complement
George Hajishengallis et al.
CELL HOST & MICROBE (2011)
Structure of the human gastric bacterial community in relation to Helicobacter pylori status
Ana Maldonado-Contreras et al.
ISME JOURNAL (2011)
Marine bacterial, archaeal and protistan association networks reveal ecological linkages
Joshua A. Steele et al.
ISME JOURNAL (2011)
Intestinal homeostasis and its breakdown in inflammatory bowel disease
Kevin J. Maloy et al.
NATURE (2011)
Network medicine: a network-based approach to human disease
Albert-Laszlo Barabasi et al.
NATURE REVIEWS GENETICS (2011)
Detecting Novel Associations in Large Data Sets
David N. Reshef et al.
SCIENCE (2011)
Phylogenetic Molecular Ecological Network of Soil Microbial Communities in Response to Elevated CO2
Jizhong Zhou et al.
MBIO (2011)
Intestinal Bacteria and the Regulation of Immune Cell Homeostasis
David A. Hill et al.
ANNUAL REVIEW OF IMMUNOLOGY, VOL 28 (2010)
Use of Ichip for High-Throughput In Situ Cultivation of Uncultivable Microbial Species
D. Nichols et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2010)
Enterobacteriaceae Act in Concert with the Gut Microbiota to Induce Spontaneous and Maternally Transmitted Colitis
Wendy S. Garrett et al.
CELL HOST & MICROBE (2010)
On the specification of structural equation models for ecological systems
James B. Grace et al.
ECOLOGICAL MONOGRAPHS (2010)
A 'rare biosphere' microorganism contributes to sulfate reduction in a peatland
Michael Pester et al.
ISME JOURNAL (2010)
Microbial community profiling for human microbiome projects: Tools, techniques, and challenges
Micah Hamady et al.
GENOME RESEARCH (2009)
A core gut microbiome in obese and lean twins
Peter J. Turnbaugh et al.
NATURE (2009)
Microbial community structure and its functional implications
Jed A. Fuhrman
NATURE (2009)
A human colonic commensal promotes colon tumorigenesis via activation of T helper type 17 T cell responses
Shaoguang Wu et al.
NATURE MEDICINE (2009)
Culture-Independent Assessment of Rhizobiales-Related Alphaproteobacteria and the Diversity of Methylobacterium in the Rhizosphere and Rhizoplane of Transgenic Eucalyptus
Fernando Dini Andreote et al.
MICROBIAL ECOLOGY (2009)
The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems
Marcel G. A. van der Heijden et al.
ECOLOGY LETTERS (2008)
A trap for in situ cultivation of filamentous actinobacteria
Ekaterina Gavrish et al.
JOURNAL OF MICROBIOLOGICAL METHODS (2008)
A single-cell view on the ecophysiology of anaerobic phototrophic bacteria
Niculina Musat et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Essay - The role of ecological theory in microbial ecology
James I. Prosser et al.
NATURE REVIEWS MICROBIOLOGY (2007)
Local similarity analysis reveals unique associations among marine bacterioplankton species and environmental factors
Quansong Ruan et al.
BIOINFORMATICS (2006)
Symbiotic bacteria as a determinant of plant community structure and plant productivity in dune grassland
MGA van der Heijden et al.
FEMS MICROBIOLOGY ECOLOGY (2006)
Invasive plant suppresses the growth of native tree seedlings by disrupting belowground mutualisms
Kristina A. Stinson et al.
PLOS BIOLOGY (2006)
Network thinking in ecology and evolution
SR Proulx et al.
TRENDS IN ECOLOGY & EVOLUTION (2005)
Host-bacterial mutualism in the human intestine
F Bäckhed et al.
SCIENCE (2005)
RNA stable isotope probing, a novel means of linking microbial community function to Phylogeny
M Manefield et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2002)
Network structure and biodiversity loss in food webs: robustness increases with connectance
JA Dunne et al.
ECOLOGY LETTERS (2002)
Share Paper
