Related references
Note: Only part of the references are listed.RNA-Seq methods for transcriptome analysis
Radmila Hrdlickova et al.
WILEY INTERDISCIPLINARY REVIEWS-RNA (2017)
Distal CpG islands can serve as alternative promoters to transcribe genes with silenced proximal promoters
Shrutii Sarda et al.
GENOME RESEARCH (2017)
ggseqlogo: a versatile R package for drawing sequence logos
Omar Wagih
BIOINFORMATICS (2017)
ENCODE data at the ENCODE portal
Cricket A. Sloan et al.
NUCLEIC ACIDS RESEARCH (2016)
A Loss-of-Function Variant in a Minor Isoform of ANK3 Protects Against Bipolar Disorder and Schizophrenia
Timothy Hughes et al.
BIOLOGICAL PSYCHIATRY (2016)
The Genetics of Neuropsychiatric Diseases: Looking In and Beyond the Exome
Erin L. Heinzen et al.
ANNUAL REVIEW OF NEUROSCIENCE, VOL 38 (2015)
NanoCAGE-XL and CapFilter: an approach to genome wide identification of high confidence transcription start sites
Jason S. Cumbie et al.
BMC GENOMICS (2015)
Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq
Amit Zeisel et al.
SCIENCE (2015)
Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells
Erik Arner et al.
SCIENCE (2015)
DENdb: database of integrated human enhancers
Haitham Ashoor et al.
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2015)
Modeling human neurological disorders with induced pluripotent stem cells
Yoichi Imaizumi et al.
JOURNAL OF NEUROCHEMISTRY (2014)
Rapid neurogenesis through transcriptional activation in human stem cells
Volker Busskamp et al.
MOLECULAR SYSTEMS BIOLOGY (2014)
An atlas of active enhancers across human cell types and tissues
Robin Andersson et al.
NATURE (2014)
A promoter-level mammalian expression atlas
Alistair R. R. Forrest et al.
NATURE (2014)
Analysis of nascent RNA identifies a unified architecture of initiation regions at mammalian promoters and enhancers
Leighton J. Core et al.
NATURE GENETICS (2014)
Generation of cerebral organoids from human pluripotent stem cells
Madeline A. Lancaster et al.
NATURE PROTOCOLS (2014)
Investigating human disease using stem cell models
Jared L. Sterneckert et al.
NATURE REVIEWS GENETICS (2014)
Revitalizing Psychiatric Therapeutics
Steven E. Hyman
NEUROPSYCHOPHARMACOLOGY (2014)
Evolutionarily Dynamic Alternative Splicing of GPR56 Regulates Regional Cerebral Cortical Patterning
Byoung-Il Bae et al.
SCIENCE (2014)
Organogenesis in a dish: Modeling development and disease using organoid technologies
Madeline A. Lancaster et al.
SCIENCE (2014)
Beyond GWASs: Illuminating the Dark Road from Association to Function
Stacey L. Edwards et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2013)
Molecular and clinical characterization of 25 individuals with exonic deletions of NRXN1 and comprehensive review of the literature
Frederique Bena et al.
AMERICAN JOURNAL OF MEDICAL GENETICS PART B-NEUROPSYCHIATRIC GENETICS (2013)
STAR: ultrafast universal RNA-seq aligner
Alexander Dobin et al.
BIOINFORMATICS (2013)
High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression
Philippe Batut et al.
GENOME RESEARCH (2013)
Widespread and extensive lengthening of 3′ UTRs in the mammalian brain
Pedro Miura et al.
GENOME RESEARCH (2013)
Cis-acting regulation of brain-specific ANK3 gene expression by a genetic variant associated with bipolar disorder
E. H. Rueckert et al.
MOLECULAR PSYCHIATRY (2013)
Rev-Erbs repress macrophage gene expression by inhibiting enhancer-directed transcription
Michael T. Y. Lam et al.
NATURE (2013)
Comparative analysis of RNA sequencing methods for degraded or low-input samples
Xian Adiconis et al.
NATURE METHODS (2013)
Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
Jason D. Buenrostro et al.
NATURE METHODS (2013)
Smart-seq2 for sensitive full-length transcriptome profiling in single cells
Simone Picelli et al.
NATURE METHODS (2013)
Integrative annotation of chromatin elements from ENCODE data
Michael M. Hoffman et al.
NUCLEIC ACIDS RESEARCH (2013)
GENCODE: The reference human genome annotation for The ENCODE Project
Jennifer Harrow et al.
GENOME RESEARCH (2012)
Landscape of transcription in human cells
Sarah Djebali et al.
NATURE (2012)
An integrated encyclopedia of DNA elements in the human genome
Ian Dunham et al.
NATURE (2012)
Combined small-molecule inhibition accelerates developmental timing and converts human pluripotent stem cells into nociceptors
Stuart M. Chambers et al.
NATURE BIOTECHNOLOGY (2012)
Highly multiplexed and strand-specific single-cell RNA 5′ end sequencing
Saiful Islam et al.
NATURE PROTOCOLS (2012)
Induced pluripotent stem cells: the new patient?
Milena Bellin et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2012)
Selective Depletion of rRNA Enables Whole Transcriptome Profiling of Archival Fixed Tissue
John D. Morlan et al.
PLOS ONE (2012)
Postmortem interval effect on RNA and gene expression in human brain tissue
Alex C. Birdsill et al.
CELL AND TISSUE BANKING (2011)
Genome-wide characterization of transcriptional start sites in humans by integrative transcriptome analysis
Riu Yamashita et al.
GENOME RESEARCH (2011)
Synthetic spike-in standards for RNA-seq experiments
Lichun Jiang et al.
GENOME RESEARCH (2011)
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan et al.
BIOINFORMATICS (2010)
Widespread transcription at neuronal activity-regulated enhancers
Tae-Kyung Kim et al.
NATURE (2010)
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
Cole Trapnell et al.
NATURE BIOTECHNOLOGY (2010)
Tissue-specific transcript annotation and expression profiling with complementary next-generation sequencing technologies
Matthew S. Hestand et al.
NUCLEIC ACIDS RESEARCH (2010)
TopHat: discovering splice junctions with RNA-Seq
Cole Trapnell et al.
BIOINFORMATICS (2009)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
Digital RNA allelotyping reveals tissue-specific and allele-specific gene expression in human
Kun Zhang et al.
NATURE METHODS (2009)
Massive transcriptional start site analysis of human genes in hypoxia cells
Katsuya Tsuchihara et al.
NUCLEIC ACIDS RESEARCH (2009)
Re-capping the message
Daniel R. Schoenberg et al.
TRENDS IN BIOCHEMICAL SCIENCES (2009)
High-resolution mapping and characterization of open chromatin across the genome
Alan P. Boyle et al.
CELL (2008)
Proliferating cells express mRNAs with shortened 3′ untranslated regions and fewer microRNA target sites
Rickard Sandberg et al.
SCIENCE (2008)
The functional consequences of alternative promoter use in mammalian genomes
Ramana V. Davuluri et al.
TRENDS IN GENETICS (2008)
A code for transcription initiation in mammalian genomes
Martin C. Frith et al.
GENOME RESEARCH (2008)
Nogo A, B and C expression in schizophrenia, depression and bipolar frontal cortex, and correlation of Nogo expression with CAA/TATC polymorphism in 3′-UTR
Gabriela Novak et al.
BRAIN RESEARCH (2006)
Genome-wide analysis of mammalian promoter architecture and evolution
Piero Carninci et al.
NATURE GENETICS (2006)
A regulatory SNP causes a human genetic disease by creating a new transcriptional promoter
Marco De Gobbi et al.
SCIENCE (2006)
Human ΔNp73 regulates a dominant negative feedback loop for TAp73 and p53
TJ Grob et al.
CELL DEATH AND DIFFERENTIATION (2001)