Related references
Note: Only part of the references are listed.Structural basis of gene regulation by the Grainyhead/CP2 transcription factor family
Qianqian Ming et al.
NUCLEIC ACIDS RESEARCH (2018)
Stable Binding of the Conserved Transcription Factor Grainy Head to its Target Genes Throughout Drosophila melanogaster Development
Markus Nevil et al.
GENETICS (2017)
FlyBase at 25: looking to the future
L. Sian Gramates et al.
NUCLEIC ACIDS RESEARCH (2017)
Stable Binding of the Conserved Transcription Factor Grainy Head to its Target Genes Throughout Drosophila melanogaster Development
Markus Nevil et al.
GENETICS (2017)
Grainyhead-like Transcription Factors in Craniofacial Development
M. R. Carpinelli et al.
JOURNAL OF DENTAL RESEARCH (2017)
chromVAR : inferring transcription-factor-associated accessibility from single-cell epigenomic data
Alicia N. Schep et al.
NATURE METHODS (2017)
An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues
M. Ryan Corces et al.
NATURE METHODS (2017)
p53 regulates enhancer accessibility and activity in response to DNA damage
Scott T. Younger et al.
NUCLEIC ACIDS RESEARCH (2017)
Roles of Grainyhead-like transcription factors in cancer
S. M. Frisch et al.
ONCOGENE (2017)
Combinatorial function of transcription factors and cofactors
Franziska Reiter et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2017)
Fine-mapping cellular QTLs with RASQUAL and ATAC-seq
Natsuhiko Kumasaka et al.
NATURE GENETICS (2016)
Multiplex enhancer-reporter assays uncover unsophisticated TP53 enhancer logic
Annelien Verfaillie et al.
GENOME RESEARCH (2016)
Pioneer Transcription Factors Target Partial DNA Motifs on Nucleosomes to Initiate Reprogramming
Abdenour Soufi et al.
CELL (2015)
Single-cell chromatin accessibility reveals principles of regulatory variation
Jason D. Buenostro et al.
NATURE (2015)
ChIPmentation: fast, robust, low-input ChIP-seq for histones and transcription factors
Christian Schmidt et al.
NATURE METHODS (2015)
i-cisTarget 2015 update: generalized cis-regulatory enrichment analysis in human, mouse and fly
Hana Imrichova et al.
NUCLEIC ACIDS RESEARCH (2015)
Identification of High-Impact cis-Regulatory Mutations Using Transcription Factor Specific Random Forest Models
Dmitry Svetlichnyy et al.
PLOS COMPUTATIONAL BIOLOGY (2015)
Discovery of Transcription Factors and Regulatory Regions Driving In Vivo Tumor Development by ATAC-seq and FAIRE-seq Open Chromatin Profiling
Kristofer Davie et al.
PLOS GENETICS (2015)
Grainyhead-like 2 (GRHL2) distribution reveals novel pathophysiological differences between human idiopathic pulmonary fibrosis and mouse models of pulmonary fibrosis
Saaket Varma et al.
AMERICAN JOURNAL OF PHYSIOLOGY-LUNG CELLULAR AND MOLECULAR PHYSIOLOGY (2014)
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
Yang Liao et al.
BIOINFORMATICS (2014)
Zelda Potentiates Morphogen Activity by Increasing Chromatin Accessibility
Sun Melody Foo et al.
CURRENT BIOLOGY (2014)
Pioneer transcription factors in cell reprogramming
Makiko Iwafuchi-Doi et al.
GENES & DEVELOPMENT (2014)
Natural variation in genome architecture among 205 Drosophila melanogaster Genetic Reference Panel lines
Wen Huang et al.
GENOME RESEARCH (2014)
Coregulation of Transcription Factor Binding and Nucleosome Occupancy through DNA Features of Mammalian Enhancers
Iros Barozzi et al.
MOLECULAR CELL (2014)
A comparative encyclopedia of DNA elements in the mouse genome
Feng Yue et al.
NATURE (2014)
Genome-scale functional characterization of Drosophila developmental enhancers in vivo
Evgeny Z. Kvon et al.
NATURE (2014)
Transcriptional enhancers: from properties to genome-wide predictions
Daria Shlyueva et al.
NATURE REVIEWS GENETICS (2014)
Mapping Gene Regulatory Networks in Drosophila Eye Development by Large-Scale Transcriptome Perturbations and Motif Inference
Delphine Potier et al.
CELL REPORTS (2014)
Sox2, a key factor in the regulation of pluripotency and neural differentiation
Shuchen Zhang
World Journal of Stem Cells (2014)
Evaluation of methods for modeling transcription factor sequence specificity
Matthew T. Weirauch et al.
NATURE BIOTECHNOLOGY (2013)
Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
Jason D. Buenrostro et al.
NATURE METHODS (2013)
Determinants of nucleosome positioning
Kevin Struhl et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2013)
Evidence for multiple roles for grainyheadlike 2 in the establishment and maintenance of human mucociliary airway epithelium
Xia Gao et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Genome-Wide Quantitative Enhancer Activity Maps Identified by STARR-seq
Cosmas D. Arnold et al.
SCIENCE (2013)
The Transcription Factors Grainyhead-like 2 and NK2-Homeobox 1 Form a Regulatory Loop That Coordinates Lung Epithelial Cell Morphogenesis and Differentiation
Saaket Varma et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2012)
DNase I sensitivity QTLs are a major determinant of human expression variation
Jacob F. Degner et al.
NATURE (2012)
The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity
Jordi Barretina et al.
NATURE (2012)
The Drosophila melanogaster Genetic Reference Panel
Trudy F. C. Mackay et al.
NATURE (2012)
An integrated encyclopedia of DNA elements in the human genome
Ian Dunham et al.
NATURE (2012)
Systematic dissection and optimization of inducible enhancers in human cells using a massively parallel reporter assay
Alexandre Melnikov et al.
NATURE BIOTECHNOLOGY (2012)
Massively parallel functional dissection of mammalian enhancers in vivo
Rupali P. Patwardhan et al.
NATURE BIOTECHNOLOGY (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Transcription factors: from enhancer binding to developmental control
Francois Spitz et al.
NATURE REVIEWS GENETICS (2012)
RSAT peak-motifs: motif analysis in full-size ChIP-seq datasets
Morgane Thomas-Chollier et al.
NUCLEIC ACIDS RESEARCH (2012)
i-cisTarget: an integrative genomics method for the prediction of regulatory features and cis-regulatory modules
Carl Herrmann et al.
NUCLEIC ACIDS RESEARCH (2012)
Genome-Wide Expression Analysis Identifies a Modulator of Ionizing Radiation-Induced p53-Independent Apoptosis in Drosophila melanogaster
Petra van Bergeijk et al.
PLOS ONE (2012)
The Functions of Grainy Head-Like Proteins in Animals and Fungi and the Evolution of Apical Extracellular Barriers
Adam Pare et al.
PLOS ONE (2012)
The variant call format and VCFtools
Petr Danecek et al.
BIOINFORMATICS (2011)
pROC: an open-source package for R and S plus to analyze and compare ROC curves
Xavier Robin et al.
BMC BIOINFORMATICS (2011)
Pioneer transcription factors: establishing competence for gene expression
Kenneth S. Zaret et al.
GENES & DEVELOPMENT (2011)
High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells
Alan P. Boyle et al.
GENOME RESEARCH (2011)
seqMINER: an integrated ChIP-seq data interpretation platform
Tao Ye et al.
NUCLEIC ACIDS RESEARCH (2011)
Grainyhead and Zelda compete for binding to the promoters of the earliest-expressed Drosophila genes
Melissa M. Harrison et al.
DEVELOPMENTAL BIOLOGY (2010)
Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
Sven Heinz et al.
MOLECULAR CELL (2010)
Emerging properties of animal gene regulatory networks
Eric H. Davidson
NATURE (2010)
The NIH Roadmap Epigenomics Mapping Consortium
Bradley E. Bernstein et al.
NATURE BIOTECHNOLOGY (2010)
Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE
Sushmita Roy et al.
SCIENCE (2010)
Robust Target Gene Discovery through Transcriptome Perturbations and Genome-Wide Enhancer Predictions in Drosophila Uncovers a Regulatory Basis for Sensory Specification
Stein Aerts et al.
PLOS BIOLOGY (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
The DNA-encoded nucleosome organization of a eukaryotic genome
Noam Kaplan et al.
NATURE (2009)
The tyrosine kinase Stitcher activates Grainy head and epidermal wound healing in Drosophila
Shenqiu Wang et al.
NATURE CELL BIOLOGY (2009)
Grainy head promotes expression of septate junction proteins and influences epithelial morphogenesis
Maithreyi Narasimha et al.
JOURNAL OF CELL SCIENCE (2008)
The zinc-finger protein Zelda is a key activator of the early zygotic genome in Drosophila
Hsiao-Lan Liang et al.
NATURE (2008)
Tools for neuroanatomy and neurogenetics in Drosophila
Barret D. Pfeiffer et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm
Xiao-Yong Li et al.
PLOS BIOLOGY (2008)
Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures
Alexander Stark et al.
NATURE (2007)
Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing
Gordon Robertson et al.
NATURE METHODS (2007)
STAMP: a web tool for exploring DNA-binding motif similarities
Shaun Mahony et al.
NUCLEIC ACIDS RESEARCH (2007)
FlyMine: an integrated database for Drosophila and Anopheles genomics
Rachel Lyne et al.
GENOME BIOLOGY (2007)
Genome-wide identification of direct targets of the Drosophila retinal determination protein Eyeless
EJ Ostrin et al.
GENOME RESEARCH (2006)
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
A Subramanian et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Core transcriptional regulatory circuitry in human embryonic stem cells
LA Boyer et al.
CELL (2005)
An epidermal barrier wound repair pathway in Drosophila is mediated by grainy head
KA Mace et al.
SCIENCE (2005)
Transcriptional enhancers: Intelligent enhanceosomes or flexible billboards?
DN Arnosti et al.
JOURNAL OF CELLULAR BIOCHEMISTRY (2005)
Different combinations of gap repressors for common stripes in Anopheles and Drosophila embryos
Y Goltsev et al.
DEVELOPMENTAL BIOLOGY (2004)
Functional conservation between members of an ancient duplicated transcription factor family, LSF/Grainyhead
K Venkatesan et al.
NUCLEIC ACIDS RESEARCH (2003)
Cluster-Buster: finding dense clusters of motifs in DNA sequences
MC Frith et al.
NUCLEIC ACIDS RESEARCH (2003)
A highly conserved novel family of mammalian developmental transcription factors related to Drosophila grainyhead
T Wilanowski et al.
MECHANISMS OF DEVELOPMENT (2002)
Detection of cis-element clusters in higher eukaryotic DNA
MC Frith et al.
BIOINFORMATICS (2001)
Share Paper
