4.8 Article

Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain

Related references

Note: Only part of the references are listed.
Article Biochemical Research Methods

Rapidly evolving homing CRISPR barcodes

Reza Kalhor et al.

NATURE METHODS (2017)

Article Biochemical Research Methods

Single-cell barcoding and sequencing using droplet microfluidics

Rapolas Zilionis et al.

NATURE PROTOCOLS (2017)

Article Multidisciplinary Sciences

Synthetic recording and in situ readout of lineage information in single cells

Kirsten L. Frieda et al.

NATURE (2017)

Article Multidisciplinary Sciences

Cell diversity and network dynamics in photosensitive human brain organoids

Giorgia Quadrato et al.

NATURE (2017)

Article Multidisciplinary Sciences

Polylox barcoding reveals haematopoietic stem cell fates realized in vivo

Weike Pei et al.

NATURE (2017)

Article Multidisciplinary Sciences

Single-cell spatial reconstruction reveals global division of labour in the mammalian liver

Keren Bahar Halpern et al.

NATURE (2017)

Article Biotechnology & Applied Microbiology

Single-cell topological RNA-seq analysis reveals insights into cellular differentiation and development

Abbas H. Rizvi et al.

NATURE BIOTECHNOLOGY (2017)

Article Biochemical Research Methods

Massively parallel single-nucleus RNA-seq with DroNc-seq

Naomi Habib et al.

NATURE METHODS (2017)

Article Biochemical Research Methods

Reversed graph embedding resolves complex single-cell trajectories

Xiaojie Qiu et al.

NATURE METHODS (2017)

Article Biochemical Research Methods

Seq-Well: portable, low-cost RNA sequencing of single cells at high throughput

Todd M. Gierahn et al.

NATURE METHODS (2017)

Review Genetics & Heredity

Building a lineage from single cells: genetic techniques for cell lineage tracking

Mollie B. Woodworth et al.

NATURE REVIEWS GENETICS (2017)

Article Multidisciplinary Sciences

Comprehensive single-cell transcriptional profiling of a multicellular organism

Junyue Cao et al.

SCIENCE (2017)

Article Multidisciplinary Sciences

The Drosophila embryo at single-cell transcriptome resolution

Nikos Karaiskos et al.

SCIENCE (2017)

Article Multidisciplinary Sciences

Single-cell RNA-seq reveals new types of human blood dendritic cells, monocytes, and progenitors

Alexandra-Chloe Villani et al.

SCIENCE (2017)

Article Biochemical Research Methods

Quantitative Analysis of Synthetic Cell Lineage Tracing Using Nuclease Barcoding

Stephanie Tzouanas Schmidt et al.

ACS SYNTHETIC BIOLOGY (2017)

Article Cell Biology

Single-Cell RNA-Seq Reveals Hypothalamic Cell Diversity

Renchao Chen et al.

CELL REPORTS (2017)

Article Developmental Biology

Lineage tracing of dlx1a/2a and dlx5a/6a expressing cells in the developing zebrafish brain

Cynthia M. Solek et al.

DEVELOPMENTAL BIOLOGY (2017)

Article Biotechnology & Applied Microbiology

Challenges and emerging directions in single-cell analysis

Guo-Cheng Yuan et al.

GENOME BIOLOGY (2017)

Article Biochemistry & Molecular Biology

Molecular Diversity of Midbrain Development in Mouse, Human, and Stem Cells

Gioele La Manno et al.

Article Biochemistry & Molecular Biology

Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics

Karthik Shekhar et al.

Article Biochemistry & Molecular Biology

DNA Repair Profiling Reveals Nonrandom Outcomes at Cas9-Mediated Breaks

Megan van Overbeek et al.

MOLECULAR CELL (2016)

Review Biotechnology & Applied Microbiology

Revealing the vectors of cellular identity with single-cell genomics

Allon Wagner et al.

NATURE BIOTECHNOLOGY (2016)

Article Biotechnology & Applied Microbiology

Wishbone identifies bifurcating developmental trajectories from single-cell data

Manu Setty et al.

NATURE BIOTECHNOLOGY (2016)

Review Neurosciences

Disentangling neural cell diversity using single-cell transcriptomics

Jean-Francois Poulin et al.

NATURE NEUROSCIENCE (2016)

Article Multidisciplinary Sciences

Oligodendrocyte heterogeneity in the mouse juvenile and adult central nervous system

Sueli Marques et al.

SCIENCE (2016)

Article Multidisciplinary Sciences

Whole-organism lineage tracing by combinatorial and cumulative genome editing

Aaron McKenna et al.

SCIENCE (2016)

Article Multidisciplinary Sciences

Continuous genetic recording with self-targeting CRISPR-Cas in human cells

Samuel D. Perli et al.

SCIENCE (2016)

Article Biochemistry & Molecular Biology

Droplet Barcoding for Single-Cell Transcriptomics Applied to Embryonic Stem Cells

Allon M. Klein et al.

Article Biochemistry & Molecular Biology

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

Evan Z. Macosko et al.

Article Cell & Tissue Engineering

Single-Cell RNA-Seq with Waterfall Reveals Molecular Cascades underlying Adult Neurogenesis

Jaehoon Shin et al.

CELL STEM CELL (2015)

Article Cell Biology

A CRISPR/Cas9 Vector System for Tissue-Specific Gene Disruption in Zebrafish

Julien Ablain et al.

DEVELOPMENTAL CELL (2015)

Article Multidisciplinary Sciences

Single-cell messenger RNA sequencing reveals rare intestinal cell types

Dominic Grun et al.

NATURE (2015)

Article Biotechnology & Applied Microbiology

Spatial reconstruction of single-cell gene expression data

Rahul Satija et al.

NATURE BIOTECHNOLOGY (2015)

Article Biotechnology & Applied Microbiology

High-throughput spatial mapping of single-cell RNA-seq data to tissue of origin

Kaia Achim et al.

NATURE BIOTECHNOLOGY (2015)

Article Multidisciplinary Sciences

Spatially resolved, highly multiplexed RNA profiling in single cells

Kok Hao Chen et al.

SCIENCE (2015)

Article Multidisciplinary Sciences

Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq

Amit Zeisel et al.

SCIENCE (2015)

Article Anatomy & Morphology

Coexpression analysis of nine neuropeptides in the neurosecretory preoptic area of larval zebrafish

Ulrich Herget et al.

FRONTIERS IN NEUROANATOMY (2015)

Article Biotechnology & Applied Microbiology

The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells

Cole Trapnell et al.

NATURE BIOTECHNOLOGY (2014)

Review Developmental Biology

Neurogenesis in zebrafish - from embryo to adult

Rebecca Schmidt et al.

NEURAL DEVELOPMENT (2013)

Article Biochemistry & Molecular Biology

ZFIN, the Zebrafish Model Organism Database: increased support for mutants and transgenics

Douglas G. Howe et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Biochemistry & Molecular Biology

Lineage Tracing

Kai Kretzschmar et al.

Article Anatomy & Morphology

The Tol2kit:: A multisite Gateway-based construction kit for Tol2 transposon transgenesis constructs

Kristen M. Kwan et al.

DEVELOPMENTAL DYNAMICS (2007)

Article Cell Biology

Apelin and its receptor control heart field formation during zebrafish gastrulation

Xin-Xin I. Zeng et al.

DEVELOPMENTAL CELL (2007)