Journal
MOLECULAR & CELLULAR PROTEOMICS
Volume 17, Issue 6, Pages 1239-1244Publisher
AMER SOC BIOCHEMISTRY MOLECULAR BIOLOGY INC
DOI: 10.1074/mcp.RA117.000543
Keywords
Targeted mass spectrometry; Mass Spectrometry; Quantification; Multiple reaction monitoring; Parallel reaction monitoring; Bioinformatics software; data repository; guidelines; panorama; skyline; software
Categories
Funding
- NHGRI NIH HHS [U54 HG008097] Funding Source: Medline
- NIAMS NIH HHS [R01 AR071762] Funding Source: Medline
- NIGMS NIH HHS [R01 GM103551, R01 GM121696, P41 GM103533] Funding Source: Medline
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To address the growing need for a centralized, community resource of published results processed with Skyline, and to provide reviewers and readers immediate visual access to the data behind published conclusions, we present Panorama Public (https://panoramaweb.org/public.url), a repository of Skyline documents supporting published results. Panorama Public is built on Panorama, an open source data management system for mass spectrometry data processed with the Skyline targeted mass spectrometry environment. The Panorama web application facilitates viewing, sharing, and disseminating results contained in Skyline documents via a web-browser. Skyline users can easily upload their documents to a Panorama server and allow other researchers to explore uploaded results in the Panorama web-interface through a variety of familiar summary graphs as well as annotated views of the chromatographic peaks processed with Skyline. This makes Panorama ideal for sharing targeted, quantitative results contained in Skyline documents with collaborators, reviewers, and the larger proteomics community. The Panorama Public repository employs the full data visualization capabilities of Panorama which facilitates sharing results with reviewers during manuscript review.
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