Related references
Note: Only part of the references are listed.Revealing Hidden Conformational Space of LOV Protein VIVID Through Rigid Residue Scan Simulations
Hongyu Zhou et al.
SCIENTIFIC REPORTS (2017)
MSMBuilder: Statistical Models for Biomolecular Dynamics
Matthew P. Harrigan et al.
BIOPHYSICAL JOURNAL (2017)
Protein Allostery and Conformational Dynamics
Jingjing Guo et al.
CHEMICAL REVIEWS (2016)
Mastering the game of Go with deep neural networks and tree search
David Silver et al.
NATURE (2016)
Rigid Residue Scan Simulations Systematically Reveal Residue Entropic Roles in Protein Allostery
Robert Kalescky et al.
PLOS COMPUTATIONAL BIOLOGY (2016)
Revealing Atomic-Level Mechanisms of Protein Allostery with Molecular Dynamics Simulations
Samuel Hertig et al.
PLOS COMPUTATIONAL BIOLOGY (2016)
Allostery without a conformational change? Revisiting the paradigm
Ruth Nussinov et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2015)
Allostery through the computational microscope: cAMP activation of a canonical signalling domain
Robert D. Malmstrom et al.
NATURE COMMUNICATIONS (2015)
The ensemble nature of allostery
Hesam N. Motlagh et al.
NATURE (2014)
A Unified View of How Allostery Works
Chung-Jung Tsai et al.
PLOS COMPUTATIONAL BIOLOGY (2014)
A Mixed Protein Structure Network and Elastic Network Model Approach to Predict the Structural Communication in Biomolecular Systems: The PDZ2 Domain from Tyrosine Phosphatase 1E As a Case Study
Francesco Raimondi et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2013)
NetworkView: 3D display and analysis of protein•RNA interaction networks
John Eargle et al.
BIOINFORMATICS (2012)
Fast and Accurate Modeling of Molecular Atomization Energies with Machine Learning
Matthias Rupp et al.
PHYSICAL REVIEW LETTERS (2012)
Structure-based model of allostery predicts coupling between distant sites
Patrick Weinkam et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Proteasome allostery as a population shift between interchanging conformers
Amy M. Ruschak et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Change in Allosteric Network Affects Binding Affinities of PDZ Domains: Analysis through Perturbation Response Scanning
Z. Nevin Gerek et al.
PLOS COMPUTATIONAL BIOLOGY (2011)
Global Dynamics of Proteins: Bridging Between Structure and Function
Ivet Bahar et al.
ANNUAL REVIEW OF BIOPHYSICS, VOL 39 (2010)
CHARMM: The Biomolecular Simulation Program
B. R. Brooks et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2009)
Protein allostery, signal transmission and dynamics: a classification scheme of allosteric mechanisms
Chung-Jung Tsai et al.
MOLECULAR BIOSYSTEMS (2009)
Dynamical networks in tRNA: protein complexes
Anurag Sethi et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Signaling pathways of PDZ2 domain: A molecular dynamics interaction correlation analysis
Yifei Kong et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2009)
Computation of Conformational Coupling in Allosteric Proteins
Brian A. Kidd et al.
PLOS COMPUTATIONAL BIOLOGY (2009)
Allostery: Absence of a change in shape does not imply that allostery is not at play
Chung-Jung Tsai et al.
JOURNAL OF MOLECULAR BIOLOGY (2008)
Allostery and cooperativity revisited
Qiang Cui et al.
PROTEIN SCIENCE (2008)
L-1-regularization path algorithm for generalized linear models
Mee Young Park et al.
JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY (2007)
Dynamically driven protein allostery
Nataliya Popovych et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2006)
Ligand-dependent dynamics and intramolecular signaling in a PDZ domain
EJ Fuentes et al.
JOURNAL OF MOLECULAR BIOLOGY (2004)
Data mining and machine learning techniques for the identification of mutagenicity inducing substructures and structure activity relationships of noncongeneric compounds
C Helma et al.
JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES (2004)
Active learning with support vector machines in the drug discovery process
MK Warmuth et al.
JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES (2003)
Decision forest: Combining the predictions of multiple independent decision tree models
WD Tong et al.
JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES (2003)
Solution structure of the PDZ2 domain from cytosolic human phosphatase hPTP1E complexed with a peptide reveals contribution of the β2-β3 loop to PDZ domain-ligand interactions
G Kozlov et al.
JOURNAL OF MOLECULAR BIOLOGY (2002)
Drug design by machine learning: support vector machines for pharmaceutical data analysis
R Burbidge et al.
COMPUTERS & CHEMISTRY (2001)
Design of effective neural network ensembles for image classification purposes
G Giacinto et al.
IMAGE AND VISION COMPUTING (2001)
Anisotropy of fluctuation dynamics of proteins with an elastic network model
AR Atilgan et al.
BIOPHYSICAL JOURNAL (2001)
Regularization networks and support vector machines
T Evgeniou et al.
ADVANCES IN COMPUTATIONAL MATHEMATICS (2000)
The Protein Data Bank
HM Berman et al.
NUCLEIC ACIDS RESEARCH (2000)
Share Paper
