4.7 Article

Concentration-dependent and configuration-dependent interactions of monovalent ions with an RNA tetraloop

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

Counting the ions surrounding nucleic acids

David R. Jacobson et al.

NUCLEIC ACIDS RESEARCH (2017)

Article Chemistry, Physical

Equilibrium Denaturation and Preferential Interactions of an RNA Tetraloop with Urea

Jacob C. Miner et al.

JOURNAL OF PHYSICAL CHEMISTRY B (2017)

Article Chemistry, Physical

Extracting water and ion distributions from solution x-ray scattering experiments

Hung T. Nguyen et al.

JOURNAL OF CHEMICAL PHYSICS (2016)

Article Multidisciplinary Sciences

Free-energy landscape of a hyperstable RNA tetraloop

Jacob C. Miner et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Review Cell Biology

SAXS studies of RNA: structures, dynamics, and interactions with partners

Yujie Chen et al.

WILEY INTERDISCIPLINARY REVIEWS-RNA (2016)

Article Biophysics

Determining the Locations of Ions and Water around DNA from X-Ray Scattering Measurements

Steve P. Meisburger et al.

BIOPHYSICAL JOURNAL (2015)

Article Biochemistry & Molecular Biology

Competitive interaction of monovalent cations with DNA from 3D-RISM

George M. Giambasu et al.

NUCLEIC ACIDS RESEARCH (2015)

Review Biochemistry & Molecular Biology

Understanding Nucleic Acid-Ion Interactions

Jan Lipfert et al.

ANNUAL REVIEW OF BIOCHEMISTRY, VOL 83 (2014)

Article Biophysics

Ion Counting from Explicit-Solvent Simulations and 3D-RISM

George M. Giambasu et al.

BIOPHYSICAL JOURNAL (2014)

Review Chemistry, Multidisciplinary

All- Atom Polarizable Force Field for DNA Based on the Classical Drude Oscillator Model

Alexey Savelyev et al.

JOURNAL OF COMPUTATIONAL CHEMISTRY (2014)

Article Biochemistry & Molecular Biology

Molecular crowders and cosolutes promote folding cooperativity of RNA under physiological ionic conditions

Christopher A. Strulson et al.

Review Chemistry, Physical

Cosolvent Effects on Protein Stability

Deepak R. Canchi et al.

ANNUAL REVIEW OF PHYSICAL CHEMISTRY, VOL 64 (2013)

Article Multidisciplinary Sciences

High-resolution reversible folding of hyperstable RNA tetraloops using molecular dynamics simulations

Alan A. Chen et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Biophysics

The Ionic Atmosphere around A-RNA: Poisson-Boltzmann and Molecular Dynamics Simulations

Serdal Kirmizialtin et al.

BIOPHYSICAL JOURNAL (2012)

Article Physics, Condensed Matter

The Donnan equilibrium: I. On the thermodynamic foundation of the Donnan equation of state

A. Philipse et al.

JOURNAL OF PHYSICS-CONDENSED MATTER (2011)

Article Chemistry, Physical

Simulating water with rigid non-polarizable models: a general perspective

Carlos Vega et al.

PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2011)

Article Biochemistry & Molecular Biology

Molecular Simulation Studies of Monovalent Counterion-Mediated Interactions in a Model RNA Kissing Loop

Alan A. Chen et al.

JOURNAL OF MOLECULAR BIOLOGY (2009)

Article Chemistry, Physical

GROMACS 4: Algorithms for highly efficient, load-balanced, and scalable molecular simulation

Berk Hess et al.

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2008)

Article Chemistry, Multidisciplinary

Simulation of the pressure and temperature folding/unfolding equilibrium of a small RNA hairpin

Angel E. Garcia et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2008)

Article Chemistry, Physical

Parameters of monovalent ions in the AMBER-99 forcefield: Assessment of inaccuracies and proposed improvements

Alan A. Chen et al.

JOURNAL OF PHYSICAL CHEMISTRY B (2007)

Article Polymer Science

Preferential interaction coefficient for nucleic acids and other cylindrical polyions

Emmanuel Trizac et al.

MACROMOLECULES (2007)

Article Chemistry, Physical

Canonical sampling through velocity rescaling

Giovanni Bussi et al.

JOURNAL OF CHEMICAL PHYSICS (2007)

Review Chemistry, Multidisciplinary

Specific ion effects at the air/water interface

P Jungwirth et al.

CHEMICAL REVIEWS (2006)

Article Multidisciplinary Sciences

Protein-solvent preferential interactions, protein hydration, and the modulation of biochemical reactions by solvent components

SN Timasheff

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)

Article Biochemistry & Molecular Biology

Experimental and computational studies of the G[UUCG]C RNA tetraloop

DJ Williams et al.

JOURNAL OF MOLECULAR BIOLOGY (2000)