Related references
Note: Only part of the references are listed.Counting the ions surrounding nucleic acids
David R. Jacobson et al.
NUCLEIC ACIDS RESEARCH (2017)
Equilibrium Denaturation and Preferential Interactions of an RNA Tetraloop with Urea
Jacob C. Miner et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2017)
Extracting water and ion distributions from solution x-ray scattering experiments
Hung T. Nguyen et al.
JOURNAL OF CHEMICAL PHYSICS (2016)
Quantifying the ion atmosphere of unfolded, single-stranded nucleic acids using equilibrium dialysis and single-molecule methods
David R. Jacobson et al.
NUCLEIC ACIDS RESEARCH (2016)
Free-energy landscape of a hyperstable RNA tetraloop
Jacob C. Miner et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
SAXS studies of RNA: structures, dynamics, and interactions with partners
Yujie Chen et al.
WILEY INTERDISCIPLINARY REVIEWS-RNA (2016)
Determining the Locations of Ions and Water around DNA from X-Ray Scattering Measurements
Steve P. Meisburger et al.
BIOPHYSICAL JOURNAL (2015)
Competitive interaction of monovalent cations with DNA from 3D-RISM
George M. Giambasu et al.
NUCLEIC ACIDS RESEARCH (2015)
Understanding Nucleic Acid-Ion Interactions
Jan Lipfert et al.
ANNUAL REVIEW OF BIOCHEMISTRY, VOL 83 (2014)
Ion Counting from Explicit-Solvent Simulations and 3D-RISM
George M. Giambasu et al.
BIOPHYSICAL JOURNAL (2014)
All- Atom Polarizable Force Field for DNA Based on the Classical Drude Oscillator Model
Alexey Savelyev et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2014)
Molecular crowders and cosolutes promote folding cooperativity of RNA under physiological ionic conditions
Christopher A. Strulson et al.
RNA (2014)
Cosolvent Effects on Protein Stability
Deepak R. Canchi et al.
ANNUAL REVIEW OF PHYSICAL CHEMISTRY, VOL 64 (2013)
High-resolution reversible folding of hyperstable RNA tetraloops using molecular dynamics simulations
Alan A. Chen et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
The Ionic Atmosphere around A-RNA: Poisson-Boltzmann and Molecular Dynamics Simulations
Serdal Kirmizialtin et al.
BIOPHYSICAL JOURNAL (2012)
The Donnan equilibrium: I. On the thermodynamic foundation of the Donnan equation of state
A. Philipse et al.
JOURNAL OF PHYSICS-CONDENSED MATTER (2011)
Simulating water with rigid non-polarizable models: a general perspective
Carlos Vega et al.
PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2011)
Molecular Simulation Studies of Monovalent Counterion-Mediated Interactions in a Model RNA Kissing Loop
Alan A. Chen et al.
JOURNAL OF MOLECULAR BIOLOGY (2009)
GROMACS 4: Algorithms for highly efficient, load-balanced, and scalable molecular simulation
Berk Hess et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2008)
Simulation of the pressure and temperature folding/unfolding equilibrium of a small RNA hairpin
Angel E. Garcia et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2008)
Parameters of monovalent ions in the AMBER-99 forcefield: Assessment of inaccuracies and proposed improvements
Alan A. Chen et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2007)
Preferential interaction coefficient for nucleic acids and other cylindrical polyions
Emmanuel Trizac et al.
MACROMOLECULES (2007)
Canonical sampling through velocity rescaling
Giovanni Bussi et al.
JOURNAL OF CHEMICAL PHYSICS (2007)
Specific ion effects at the air/water interface
P Jungwirth et al.
CHEMICAL REVIEWS (2006)
Precipitation of RNA impurities with high salt in a plasmid DNA purification process: Use of experimental design to determine reaction conditions
A Eon-Duval et al.
BIOTECHNOLOGY AND BIOENGINEERING (2003)
Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression
W Winkler et al.
NATURE (2002)
Protein-solvent preferential interactions, protein hydration, and the modulation of biochemical reactions by solvent components
SN Timasheff
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
Experimental and computational studies of the G[UUCG]C RNA tetraloop
DJ Williams et al.
JOURNAL OF MOLECULAR BIOLOGY (2000)