Identification of the produced volatile organic compounds and the involved soil bacteria during decomposition of watermelon plant residues in a Fusarium-infested soil

In continuously cropped fields, residues from decomposing watermelon plants are a primary source of auto toxins, which can inhibit watermelon growth and facilitate invasion of soil-borne pathogens. The composition of the autotoxins produced and the primary microbial decomposers remain unknown. Therefore, a microcosm experiment was conducted to identify the produced volatile organic compounds (VOCs, majority of which are believed to act as autotoxins) as well as the bacteria decomposers of watermelon residue decomposition in Fusarium-infested soil at 7, 14, 30 and 45 days post-inoculation (dpi) by gas chromatography mass spectrometry (GC MS) and C-13-DNA stable isotope probing-denaturing gradient gel electrophoresis (C-13-DNA-SIP-DGGE), respectively. Our results indicate that at the beginning of decomposition, there was an increase in the formation of complex phenolic, alcoholic and ester compounds (e.g., 2,6-Bis(1,1-dimethylethyl)-4-(1-oxopropyl)phenol), whereas at 45 dpi, the VOCs were alkenes and alkanes (e.g., dodecane, caryophyllene, pentadecane) with simple structures. The residue-C assimilating community was dominated by the Phyla Alphaproteobacteria, Betaproteobacteria and Firmicutes at 7 dpi. From 14 to 45 dpi, Gammaproteobacteria together with Alphaproteobacteria became dominant. In total, there were 27 bacterial species from 9 phyla that utilized the C-13 residues in the microcosms. Although the VOC profiles and bacterial decomposers might vary from soils and conditions, these results increase our understanding of residue decomposition of autotoxins and may contribute to mitigate soil-borne disease via crop residue management in field practice.