4.2 Review

Characterizing disease-associated changes in post-translational modifications by mass spectrometry

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

ActiveDriverDB: human disease mutations and genome variation in post-translational modification sites of proteins

Michal Krassowski et al.

NUCLEIC ACIDS RESEARCH (2018)

Editorial Material Oncology

Understanding histone deacetylation in Huntington's disease

Luis Miguel Valor

ONCOTARGET (2017)

Review Medicine, Research & Experimental

The crucial role of protein phosphorylation in cell signaling and its use as targeted therapy

Fatima Ardito et al.

INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE (2017)

Review Biochemical Research Methods

Targeted mass spectrometry: An emerging powerful approach to unblock the bottleneck in phosphoproteomics

Nerea Osinalde et al.

JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES (2017)

Article Biotechnology & Applied Microbiology

Inference and quantification of peptidoforms in large sample cohorts by SWATH-MS

George Rosenberger et al.

NATURE BIOTECHNOLOGY (2017)

Review Biochemical Research Methods

SWATH-MS as a tool for biomarker discovery: From basic research to clinical applications

Sandra Isabel Anjo et al.

PROTEOMICS (2017)

Article Biochemical Research Methods

Spectral library-based glycopeptide analysis-detection of circulating galectin-3 binding protein in pancreatic cancer

Eslam N. Nigjeh et al.

PROTEOMICS CLINICAL APPLICATIONS (2017)

Article Multidisciplinary Sciences

Hydrogen bond based smart polymer for highly selective and tunable capture of multiply phosphorylated peptides

Guangyan Qing et al.

NATURE COMMUNICATIONS (2017)

Review Biochemistry & Molecular Biology

Protein SUMOylation modification and its associations with disease

Yanfang Yang et al.

OPEN BIOLOGY (2017)

Review Chemistry, Multidisciplinary

Chemical Approaches to Investigate Labile Peptide and Protein Phosphorylation

Anett Hauser et al.

ACCOUNTS OF CHEMICAL RESEARCH (2017)

Article Biochemistry & Molecular Biology

Discovering Targets of Non-enzymatic Acylation by Thioester Reactivity Profiling

Rhushikesh A. Kulkarni et al.

CELL CHEMICAL BIOLOGY (2017)

Article Biochemical Research Methods

Opening a SWATH Window on Posttranslational Modifications: Automated Pursuit of Modified Peptides

Andrew Keller et al.

MOLECULAR & CELLULAR PROTEOMICS (2016)

Article Chemistry, Analytical

FLEXITau: Quantifying Post-translational Modifications of Tau Protein in Vitro and in Human Disease

Waltraud Mair et al.

ANALYTICAL CHEMISTRY (2016)

Article Biochemistry & Molecular Biology

Post-translational modifications of CD36 (SR-B2): Implications for regulation of myocellular fatty acid uptake

Joost J. F. P. Luiken et al.

BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE (2016)

Article Physiology

Human Achilles tendon glycation and function in diabetes

Christian Couppe et al.

JOURNAL OF APPLIED PHYSIOLOGY (2016)

Article Biochemical Research Methods

SWATH-MS Glycoproteomics Reveals Consequences of Defects in the Glycosylation Machinery

Lucia F. Zacchi et al.

MOLECULAR & CELLULAR PROTEOMICS (2016)

Article Biochemistry & Molecular Biology

Ultra-deep tyrosine phosphoproteomics enabled by a phosphotyrosine superbinder

Yangyang Bian et al.

NATURE CHEMICAL BIOLOGY (2016)

Article Biochemical Research Methods

OpenMS: a flexible open-source software platform for mass spectrometry data analysis

Hannes L. Roest et al.

NATURE METHODS (2016)

Article Multidisciplinary Sciences

Evolution of a mass spectrometry-grade protease with PTM-directed specificity

Duc T. Tran et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Review Chemistry, Analytical

The Size of the Human Proteome: The Width and Depth

Elena A. Ponomarenko et al.

INTERNATIONAL JOURNAL OF ANALYTICAL CHEMISTRY (2016)

Review Neurosciences

Ubiquitin phosphorylation in Parkinson's disease: Implications for pathogenesis and treatment

Lih-Shen Chin et al.

TRANSLATIONAL NEURODEGENERATION (2016)

Article Biochemistry & Molecular Biology

Nonenzymatic Protein Acetylation Detected by NAPPA Protein Arrays

Adam S. Olia et al.

ACS CHEMICAL BIOLOGY (2015)

Article Biochemical Research Methods

Minimizing technical variation during sample preparation prior to label-free quantitative mass spectrometry

E. Scheerlinck et al.

ANALYTICAL BIOCHEMISTRY (2015)

Article Biochemistry & Molecular Biology

Chemical reporters for exploring protein acylation

Emmanuelle Thinon et al.

BIOCHEMICAL SOCIETY TRANSACTIONS (2015)

Article Biochemistry & Molecular Biology

Analysis of acetylation stoichiometry suggests that SIRT3 repairs nonenzymatic acetylation lesions

Brian T. Weinert et al.

EMBO JOURNAL (2015)

Article Biochemical Research Methods

Deep, Quantitative Coverage of the Lysine Acetylome Using Novel Anti-acetyl-lysine Antibodies and an Optimized Proteomic Workflow

Tanya Svinkina et al.

MOLECULAR & CELLULAR PROTEOMICS (2015)

Article Biotechnology & Applied Microbiology

High-throughput phosphoproteomics reveals in vivo insulin signaling dynamics

Sean J. Humphrey et al.

NATURE BIOTECHNOLOGY (2015)

Editorial Material Biochemical Research Methods

Recent advances in targeted proteomics for clinical applications

Bruno Domon et al.

PROTEOMICS CLINICAL APPLICATIONS (2015)

Review Biochemical Research Methods

Targeted methods for quantitative analysis of protein glycosylation

Radoslav Goldman et al.

PROTEOMICS CLINICAL APPLICATIONS (2015)

Review Biochemical Research Methods

Engaging challenges in glycoproteomics: recent advances in MS-based glycopeptide analysis

Venkata Kolli et al.

BIOANALYSIS (2015)

Article Cell Biology

An Augmented Multiple-Protease-Based Human Phosphopeptide Atlas

Piero Giansanti et al.

CELL REPORTS (2015)

Article Biochemistry & Molecular Biology

Histone H3 Ser57 and Thr58 phosphorylation in the brain of 5XFAD mice

Kyle W. Anderson et al.

FEBS OPEN BIO (2015)

Article Biochemical Research Methods

Histone post-translational modifications in frontal cortex from human donors with Alzheimer's disease

Kyle W. Anderson et al.

CLINICAL PROTEOMICS (2015)

Article Biochemical Research Methods

Mass Spectrometric Analysis of the Cell Surface N-Glycoproteome by Combining Metabolic Labeling and Click Chemistry

Johanna M. Smeekens et al.

JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY (2015)

Article Biochemical Research Methods

Lysine Malonylation Is Elevated in Type 2 Diabetic Mouse Models and Enriched in Metabolic Associated Proteins

Yipeng Du et al.

MOLECULAR & CELLULAR PROTEOMICS (2015)

Article Endocrinology & Metabolism

Diabetes Induces Lysine Acetylation of Intermediary Metabolism Enzymes in the Kidney

Hari Kosanam et al.

DIABETES (2014)

Article Biochemistry & Molecular Biology

Multiple evidence strands suggest that there may be as few as 19 000 human protein-coding genes

Iakes Ezkurdia et al.

HUMAN MOLECULAR GENETICS (2014)

Article Biochemical Research Methods

Spatial and Temporal Effects in Protein Post-translational Modification Distributions in the Developing Mouse Brain

Alistair V. G. Edwards et al.

JOURNAL OF PROTEOME RESEARCH (2014)

Article Biochemical Research Methods

Histone H1 Phosphorylation in Breast Cancer

Sean W. Harshman et al.

JOURNAL OF PROTEOME RESEARCH (2014)

Article Biochemical Research Methods

Neuronal process structure and growth proteins are targets of heavy PTM regulation during brain development

Alistair V. G. Edwards et al.

JOURNAL OF PROTEOMICS (2014)

Article Biochemical Research Methods

Absolute Quantitation of Glycosylation Site Occupancy Using Isotopically Labeled Standards and LC-MS

Zhikai Zhu et al.

JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY (2014)

Review Biochemistry & Molecular Biology

Nonenzymatic Protein Acylation as a Carbon Stress Regulated by Sirtuin Deacylases

Gregory R. Wagner et al.

MOLECULAR CELL (2014)

Article Biochemistry & Molecular Biology

Acetylation dynamics and stoichiometry in Saccharomyces cerevisiae

Brian T. Weinert et al.

MOLECULAR SYSTEMS BIOLOGY (2014)

Review Biochemical Research Methods

The next level of complexity: Crosstalk of posttranslational modifications

A. Saskia Venne et al.

PROTEOMICS (2014)

Article Multidisciplinary Sciences

Large-scale analysis of lysine SUMOylation by SUMO remnant immunoaffinity profiling

Frederic Lamoliatte et al.

NATURE COMMUNICATIONS (2014)

Review Neurosciences

Ubiquitin pathways in neurodegenerative disease

Graham Atkin et al.

FRONTIERS IN MOLECULAR NEUROSCIENCE (2014)

Article Chemistry, Multidisciplinary

A Chemical Probe for Lysine Malonylation

Xiucong Bao et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2013)

Review Medical Laboratory Technology

Review: Glycation of human serum albumin

Jeanethe Anguizola et al.

CLINICA CHIMICA ACTA (2013)

Review Pathology

Mass spectrometric protein maps for biomarker discovery and clinical research

Yansheng Liu et al.

EXPERT REVIEW OF MOLECULAR DIAGNOSTICS (2013)

Article Endocrinology & Metabolism

Signal transduction in cerebral arteries after subarachnoid hemorrhage-a phosphoproteomic approach

Benjamin L. Parker et al.

JOURNAL OF CEREBRAL BLOOD FLOW AND METABOLISM (2013)

Article Biochemical Research Methods

Alterations of Histone H1 Phosphorylation During Bladder Carcinogenesis

Kelly H. Telu et al.

JOURNAL OF PROTEOME RESEARCH (2013)

Article Biochemical Research Methods

Integrated proteomic analysis of post-translational modifications by serial enrichment

Philipp Mertins et al.

NATURE METHODS (2013)

Article Biochemical Research Methods

Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation

Danielle L. Swaney et al.

NATURE METHODS (2013)

Editorial Material Cardiac & Cardiovascular Systems

A Twist on Quantification Measuring the Site Occupancy of S-Nitrosylation

Christopher I. Murray et al.

CIRCULATION RESEARCH (2012)

Article Biochemical Research Methods

Human proteome analysis by using reversed phase monolithic silica capillary columns with enhanced sensitivity

Mio Iwasaki et al.

JOURNAL OF CHROMATOGRAPHY A (2012)

Article Biochemical Research Methods

Identifying the CHO Secretome using Mucin-type O-Linked Glycosylation and Click-chemistry

Peter G. Slade et al.

JOURNAL OF PROTEOME RESEARCH (2012)

Article Biochemical Research Methods

Synaptic Protein Ubiquitination in Rat Brain Revealed by Antibody-based Ubiquitome Analysis

Chan Hyun Na et al.

JOURNAL OF PROTEOME RESEARCH (2012)

Article Biochemical Research Methods

A Strategy for Large-Scale Phosphoproteomics and SRM-Based Validation of Human Breast Cancer Tissue Samples

Ryohei Narumi et al.

JOURNAL OF PROTEOME RESEARCH (2012)

Article Biochemical Research Methods

Chemical Deamidation: A Common Pitfall in Large-Scale N-Linked Glycoproteomic Mass Spectrometry-Based Analyses

Giuseppe Palmisano et al.

JOURNAL OF PROTEOME RESEARCH (2012)

Article Biochemical Research Methods

Protein phosphorylation patterns in serum from schizophrenia patients and healthy controls

Julian A. J. Jaros et al.

JOURNAL OF PROTEOMICS (2012)

Article Biochemical Research Methods

TiSH - a robust and sensitive global phosphoproteomics strategy employing a combination of TiO2, SIMAC, and HILIC

Kasper Engholm-Keller et al.

JOURNAL OF PROTEOMICS (2012)

Article Biochemical Research Methods

Targeted proteomics for quantification of histone acetylation in Alzheimer's disease

Kangling Zhang et al.

PROTEOMICS (2012)

Review Medicine, Research & Experimental

Post-translational modification: nature's escape from genetic imprisonment and the basis for dynamic information encoding

Sudhakaran Prabakaran et al.

WILEY INTERDISCIPLINARY REVIEWS-SYSTEMS BIOLOGY AND MEDICINE (2012)

Article Biochemistry & Molecular Biology

Unraveling the Ubiquitome of the Human Malaria Parasite

Nadia Ponts et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2011)

Article Biochemical Research Methods

Universal and Confident Phosphorylation Site Localization Using phosphoRS

Thomas Taus et al.

JOURNAL OF PROTEOME RESEARCH (2011)

Article Biochemical Research Methods

Confident Phosphorylation Site Localization Using the Mascot Delta Score

Mikhail M. Savitski et al.

MOLECULAR & CELLULAR PROTEOMICS (2011)

Article Biochemical Research Methods

Correct Interpretation of Comprehensive Phosphorylation Dynamics Requires Normalization by Protein Expression Changes

Ronghu Wu et al.

MOLECULAR & CELLULAR PROTEOMICS (2011)

Article Biochemistry & Molecular Biology

Characterization of ubiquitination dependent dynamics in growth factor receptor signaling by quantitative proteomics

Vyacheslav Akimov et al.

MOLECULAR BIOSYSTEMS (2011)

Article Oncology

Targeting Tyrosine Phosphorylation of PCNA Inhibits Prostate Cancer Growth

Huajun Zhao et al.

MOLECULAR CANCER THERAPEUTICS (2011)

Article Biochemistry & Molecular Biology

Systematic and Quantitative Assessment of the Ubiquitin-Modified Proteome

Woong Kim et al.

MOLECULAR CELL (2011)

Article Multidisciplinary Sciences

Site-specific characterization of threonine, serine, and tyrosine glycosylations of amyloid precursor protein/amyloid β-peptides in human cerebrospinal fluid

Adnan Halim et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Review Peripheral Vascular Disease

Anti-angiogenic tyrosine kinase inhibitors: what is their mechanism of action?

Kristy J. Gotink et al.

ANGIOGENESIS (2010)

Article Biochemical Research Methods

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

Brendan MacLean et al.

BIOINFORMATICS (2010)

Article Neurosciences

Deficits in Syntaxin 1 Phosphorylation in Schizophrenia Prefrontal Cortex

Max A. Castillo et al.

BIOLOGICAL PSYCHIATRY (2010)

Article Biochemical Research Methods

Value of Using Multiple Proteases for Large-Scale Mass Spectrometry-Based Proteomics

Danielle L. Swaney et al.

JOURNAL OF PROTEOME RESEARCH (2010)

Article Biochemical Research Methods

Undesirable Charge-Enhancement of Isobaric Tagged Phosphopeptides Leads to Reduced Identification Efficiency

Tine E. Thingholm et al.

JOURNAL OF PROTEOME RESEARCH (2010)

Article Biochemical Research Methods

Repeatability and Reproducibility in Proteomic Identifications by Liquid Chromatography-Tandem Mass Spectrometry

David L. Tabb et al.

JOURNAL OF PROTEOME RESEARCH (2010)

Article Biotechnology & Applied Microbiology

Options and considerations when selecting a quantitative proteomics strategy

Bruno Domon et al.

NATURE BIOTECHNOLOGY (2010)

Article Biochemistry & Molecular Biology

Quantitative Phosphoproteomics Reveals Widespread Full Phosphorylation Site Occupancy During Mitosis

Jesper V. Olsen et al.

SCIENCE SIGNALING (2010)

Article Biochemistry & Molecular Biology

The Human Scavenger Receptor CD36 GLYCOSYLATION STATUS AND ITS ROLE IN TRAFFICKING AND FUNCTION

Sarah J. Hoosdally et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2009)

Article Multidisciplinary Sciences

A role for the TGFβ-Par6 polarity pathway in breast cancer progression

Alicia M. Viloria-Petit et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Multidisciplinary Sciences

Lysine Acetylation Targets Protein Complexes and Co-Regulates Major Cellular Functions

Chunaram Choudhary et al.

SCIENCE (2009)

Review Medicine, General & Internal

Bisphosphonates: Mechanism of action and role in clinical practice

Mathew T. Drake et al.

MAYO CLINIC PROCEEDINGS (2008)

Article Multidisciplinary Sciences

Advances in Quantitative Hepcidin Measurements by Time-of-Flight Mass Spectrometry

Dorine W. Swinkels et al.

PLOS ONE (2008)

Article Biochemical Research Methods

Identification of phosphoproteins in kidney tissues from patients with autosomal dominant polycystic kidney disease

Yawei Liu et al.

PROTEOMICS CLINICAL APPLICATIONS (2008)

Article Biochemical Research Methods

Exploring the sialiome using titanium dioxide chromatography and mass spectrometry

Martin R. Larsen et al.

MOLECULAR & CELLULAR PROTEOMICS (2007)

Article Biochemical Research Methods

Evaluation of the impact of some experimental procedures on different phosphopeptide enrichment techniques

Soren S. Jensen et al.

RAPID COMMUNICATIONS IN MASS SPECTROMETRY (2007)

Article Cell Biology

Tyrosine phosphorylation controls PCNA function through protein stability

Shao-Chun Wang et al.

NATURE CELL BIOLOGY (2006)

Review Biochemistry & Molecular Biology

Glycosylation in cellular mechanisms of health and disease

Kazuaki Ohtsubo et al.

Article Biochemistry & Molecular Biology

Substrate and functional diversity of lysine acetylation revealed by a proteomics survey

Sung Chan Kim et al.

MOLECULAR CELL (2006)

Article Biochemical Research Methods

Highly selective enrichment of phosphorylated peptides from peptide mixtures using titanium dioxide microcolumns

MR Larsen et al.

MOLECULAR & CELLULAR PROTEOMICS (2005)

Article Chemistry, Analytical

Phosphopeptide-selective column-switching RP-HPLC with a titania precolumn

I Kuroda et al.

ANALYTICAL SCIENCES (2004)

Article Biotechnology & Applied Microbiology

A proteomics approach to understanding protein ubiquitination

JM Peng et al.

NATURE BIOTECHNOLOGY (2003)

Article Multidisciplinary Sciences

Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS

SA Gerber et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)

Article Multidisciplinary Sciences

Shotgun identification of protein modifications from protein complexes and lens tissue

MJ MacCoss et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)