Related references
Note: Only part of the references are listed.CDD/SPARCLE: functional classification of proteins via subfamily domain architectures
Aron Marchler-Bauer et al.
NUCLEIC ACIDS RESEARCH (2017)
Major transitions in dinoflagellate evolution unveiled by phylotranscriptomics
Jan Janouskovec et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Insights into the red algae and eukaryotic evolution from the genome of Porphyra umbilicalis (Bangiophyceae, Rhodophyta)
Susan H. Brawley et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Intraspecific and interspecific variation in thermotolerance and photoacclimation in Symbiodinium dinoflagellates
Erika M. Diaz-Almeyda et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2017)
Signatures of adaptation and symbiosis in genomes and transcriptomes of Symbiodinium
Ral A. Gonzalez-Pech et al.
SCIENTIFIC REPORTS (2017)
A draft genome of the brown alga, Cladosiphon okamuranus, S-strain: a platformfor future studies of 'mozuku' biology
Koki Nishitsuji et al.
DNA RESEARCH (2016)
Symbiodinium population genetics: testing for species boundaries and analysing samples with mixed genotypes
Drew C. Wham et al.
MOLECULAR ECOLOGY (2016)
Heat Induction of Cyclic Electron Flow around Photosystem I in the Symbiotic Dinoflagellate Symbiodinium
Yusuke Aihara et al.
PLANT PHYSIOLOGY (2016)
Protein networks identify novel symbiogenetic genes resulting from plastid endosymbiosis
Raphael Meheust et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
Reefgenomics.Org - a repository for marine genomics data
Yi Jin Liew et al.
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2016)
Comparative genomics explains the evolutionary success of reef-forming corals
Debashish Bhattacharya et al.
ELIFE (2016)
Genomes of coral dinoflagellate symbionts highlight evolutionary adaptations conducive to a symbiotic lifestyle
M. Aranda et al.
SCIENTIFIC REPORTS (2016)
Multifunctional polyketide synthase genes identified by genomic survey of the symbiotic dinoflagellate, Symbiodinium minutum
Girish Beedessee et al.
BMC GENOMICS (2015)
Comparison of the terrestrial cyanobacterium Leptolyngbya sp NIES-2104 and the freshwater Leptolyngbya boryana PCC 6306 genomes
Yohei Shimura et al.
DNA RESEARCH (2015)
Symbiodinium tridacnidorum sp nov., a dinoflagellate common to Indo-Pacific giant clams, and a revised morphological description of Symbiodinium microadriaticum Freudenthal, emended Trench & Blank
Sung Yeon Lee et al.
EUROPEAN JOURNAL OF PHYCOLOGY (2015)
Symbiodinium necroappetens sp nov (Dinophyceae): an opportunist 'zooxanthella' found in bleached and diseased tissues of Caribbean reef corals
Todd C. Lajeunesse et al.
EUROPEAN JOURNAL OF PHYCOLOGY (2015)
Dynamics and mechanisms of DNA repair by photolyase
Zheyun Liu et al.
PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2015)
The genome of Aiptasia, a sea anemone model for coral symbiosis
Sebastian Baumgarten et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
The Symbiodinium kawagutii genome illuminates dinoflagellate gene expression and coral symbiosis
Senjie Lin et al.
SCIENCE (2015)
Diversification of the Light-Harvesting Complex Gene Family via Intra- and Intergenic Duplications in the Coral Symbiotic Alga Symbiodinium
Shinichiro Maruyama et al.
PLOS ONE (2015)
Discovery of Gene Cluster for Mycosporine-Like Amino Acid Biosynthesis from Actinomycetales Microorganisms and Production of a Novel Mycosporine-Like Amino Acid by Heterologous Expression
Kiyoko T. Miyamoto et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2014)
A genomic approach to coral-dinoflagellate symbiosis: studies of Acropora digitifera and Symbiodinium minutum
Chuya Shinzato et al.
FRONTIERS IN MICROBIOLOGY (2014)
Multi-gene analysis of Symbiodinium dinoflagellates: a perspective on rarity, symbiosis, and evolution
Xavier Pochon et al.
PEERJ (2014)
Draft Assembly of the Symbiodinium minutum Nuclear Genome Reveals Dinoflagellate Gene Structure
Eiichi Shoguchi et al.
CURRENT BIOLOGY (2013)
dUTPases, the unexplored family of signalling molecules
Jose R. Penades et al.
CURRENT OPINION IN MICROBIOLOGY (2013)
Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing
Patrick M. Shih et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
MarinegenomicsDB: An Integrated Genome Viewer for Community-based Annotation of Genomes
Ryo Koyanagi et al.
ZOOLOGICAL SCIENCE (2013)
IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
Yu Peng et al.
BIOINFORMATICS (2012)
Study of Cnidarian-Algal Symbiosis in the Omics Age
Eli Meyer et al.
BIOLOGICAL BULLETIN (2012)
GeoSymbio: a hybrid, cloud-based web application of global geospatial bioinformatics and ecoinformatics for Symbiodinium-host symbioses
Erik C. Franklin et al.
MOLECULAR ECOLOGY RESOURCES (2012)
Unveiling Plant mTERF Functions
Pedro Robles et al.
MOLECULAR PLANT (2012)
MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
Fredrik Ronquist et al.
SYSTEMATIC BIOLOGY (2012)
Mechanisms of Maternal Inheritance of Dinoflagellate Symbionts in the Acoelomorph Worm Waminoa litus
Tomoe Hikosaka-Katayama et al.
ZOOLOGICAL SCIENCE (2012)
Dinoflagellate Genome Evolution
Jennifer H. Wisecaver et al.
ANNUAL REVIEW OF MICROBIOLOGY, VOL 65 (2011)
Scaffolding pre-assembled contigs using SSPACE
Marten Boetzer et al.
BIOINFORMATICS (2011)
Using the Acropora digitifera genome to understand coral responses to environmental change
Chuya Shinzato et al.
NATURE (2011)
Full-length transcriptome assembly from RNA-Seq data without a reference genome
Manfred G. Grabherr et al.
NATURE BIOTECHNOLOGY (2011)
Microbial ultraviolet sunscreens
Qunjie Gao et al.
NATURE REVIEWS MICROBIOLOGY (2011)
Plastid gene expression and plant development require a plastidic protein of the mitochondrial transcription termination factor family
Elena Babiychuk et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Genomic understanding of dinoflagellates
Senjie Lin
RESEARCH IN MICROBIOLOGY (2011)
TreeGraph 2: Combining and visualizing evidence from different phylogenetic analyses
Ben C. Stoever et al.
BMC BIOINFORMATICS (2010)
A new Symbiodinium clade (Dinophyceae) from soritid foraminifera in Hawai'i
Xavier Pochon et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2010)
The sequence and de novo assembly of the giant panda genome
Ruiqiang Li et al.
NATURE (2010)
The Pfam protein families database
Robert D. Finn et al.
NUCLEIC ACIDS RESEARCH (2010)
The Genetic and Molecular Basis for Sunscreen Biosynthesis in Cyanobacteria
Emily P. Balskus et al.
SCIENCE (2010)
TopHat: discovering splice junctions with RNA-Seq
Cole Trapnell et al.
BIOINFORMATICS (2009)
JBrowse: A next-generation genome browser
Mitchell E. Skinner et al.
GENOME RESEARCH (2009)
Distinct Gene Number-Genome Size Relationships for Eukaryotes and Non-Eukaryotes: Gene Content Estimation for Dinoflagellate Genomes
Yubo Hou et al.
PLOS ONE (2009)
Different thermal sensitivity of the repair of photodamaged photosynthetic machinery in cultured Symbiodinium species
Shunichi Takahashi et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Widespread recycling of processed cDNAs in dinoflagellates
Claudio H. Slamovits et al.
CURRENT BIOLOGY (2008)
Phylogenetic analyses of potentially free-living Symbiodinium spp. isolated from coral reef sand in Okinawa, Japan
Mamiko Hirose et al.
MARINE BIOLOGY (2008)
Neurotoxins from Marine Dinoflagellates: A Brief Review
Da-Zhi Wang
Marine Drugs (2008)
Enzymes of the shikimic acid pathway encoded in the genome of a basal metazoan, Nematostella vectensis, have microbial origins
Antonio Starcevic et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Functional diversity in coral-dinoflagellate symbiosis
Michael Stat et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Enhanced photoprotection pathways in symbiotic dinoflagellates of shallow-water corals and other cnidarians
Jennifer McCabe Reynolds et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
Alexandros Stamatakis
BIOINFORMATICS (2006)
The distribution of mycosporine-like amino acids (MAAs) and the phylogenetic identity of symbiotic dinoflagellates in cnidarian hosts from the Mexican Caribbean
Anastazia T. Banaszak et al.
JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY (2006)
Lateral gene transfer of a multigene region from cyanobacteria to dinotlagellates resulting in a novel plastid-targeted fusion protein
RF Waller et al.
MOLECULAR BIOLOGY AND EVOLUTION (2006)
Regulation of protein phosphatase type 1 and cell cycle progression by PfLRR1, a novel leucine-rich repeat protein of the human malaria parasite Plasmodium falciparum
W Daher et al.
MOLECULAR MICROBIOLOGY (2006)
Comparing the Dictyostelium and Entamoeba genomes reveals an ancient split in the Conosa lineage
Jie Song et al.
PLOS COMPUTATIONAL BIOLOGY (2005)
A family of putative transcription termination factors shared amongst metazoans and plants
T Linder et al.
CURRENT GENETICS (2005)
Genetic diversity of symbiotic dinoflagellates in the genus Symbiodinium
MA Coffroth et al.
PROTIST (2005)
Closely related Symbiodinium spp. differ in relative dominance in coral reef host communities across environmental, latitudinal and biogeographic gradients
TC LaJeunesse et al.
MARINE ECOLOGY PROGRESS SERIES (2004)
Why chloroplasts and mitdchondria contain genomes
JF Allen
COMPARATIVE AND FUNCTIONAL GENOMICS (2003)
Complex gene structure of the form II RUBISCO in the dinoflagellate Prorocentrum minimum (Dinophyceae)
H Zhang et al.
JOURNAL OF PHYCOLOGY (2003)
The leucine-rich repeat as a protein recognition motif
B Kobe et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2001)
Share Paper
