Journal
BIOINFORMATICS
Volume 34, Issue 21, Pages 3759-3763Publisher
OXFORD UNIV PRESS
DOI: 10.1093/bioinformatics/bty427
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Funding
- National Research Foundation (NRF), South Africa [93690]
- National Human Genome Research Institute (NHGRI), Office of the Director, National Institutes of Health (OD) [U24HG006941]
- Scientific and Technological Research Council of Turkey [116F229]
- NATIONAL HUMAN GENOME RESEARCH INSTITUTE [U24HG006941] Funding Source: NIH RePORTER
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MODE-TASK, a novel and versatile software suite, comprises Principal Component Analysis, Multidimensional Scaling, and t-Distributed Stochastic Neighbor Embedding techniques using Molecular Dynamics trajectories. MODE-TASK also includes a Normal Mode Analysis tool based on Anisotropic Network Model so as to provide a variety of ways to analyse and compare large-scale motions of protein complexes for which long MD simulations are prohibitive. Beside the command line function, a GUI has been developed as a PyMOL plugin.
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