Related references
Note: Only part of the references are listed.Systematic analysis and prediction of type IV secreted effector proteins by machine learning approaches
Jiawei Wang et al.
BRIEFINGS IN BIOINFORMATICS (2019)
PAAR-Rhs proteins harbor various C-terminal toxins to diversify the antibacterial pathways of type VI secretion systems
Jiale Ma et al.
ENVIRONMENTAL MICROBIOLOGY (2017)
Manganese scavenging and oxidative stress response mediated by type VI secretion system in Burkholderia thailandensis
Meiru Si et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
A Pseudomonas T6SS effector recruits PQS-containing outer membrane vesicles for iron acquisition
Jinshui Lin et al.
NATURE COMMUNICATIONS (2017)
SecretEPDB: a comprehensive web-based resource for secreted effector proteins of the bacterial types III, IV and VI secretion systems
Yi An et al.
SCIENTIFIC REPORTS (2017)
Type VI Secretion Effectors: Methodologies and Biology
Yun-Wei Lien et al.
FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY (2017)
POSSUM: a bioinformatics toolkit for generating numerical sequence feature descriptors based on PSSM profiles
Jiawei Wang et al.
BIOINFORMATICS (2017)
Accurate in silico prediction of species-specific methylation sites based on information gain feature optimization
Ping-Ping Wen et al.
BIOINFORMATICS (2016)
Type VI Secretion System Substrates Are Transferred and Reused among Sister Cells
Andrea Vettiger et al.
CELL (2016)
A phospholipase A1 antibacterial Type VI secretion effector interacts directly with the C-terminal domain of the VgrG spike protein for delivery
Nicolas Flaugnatti et al.
MOLECULAR MICROBIOLOGY (2016)
VgrG C terminus confers the type VI effector transport specificity and is required for binding with PAAR and adaptor-effector complex
Devanand D. Bondage et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
Aim, Load, Fire: The Type VI Secretion System, a Bacterial Nanoweapon
Francesca R. Cianfanelli et al.
TRENDS IN MICROBIOLOGY (2016)
Francisella tularensis IglG Belongs to a Novel Family of PAAR-Like T6SS Proteins and Harbors a Unique N-terminal Extension Required for Virulence
Melanie Rigard et al.
PLOS PATHOGENS (2016)
protr/ProtrWeb: R package and web server for generating various numerical representation schemes of protein sequences
Nan Xiao et al.
BIOINFORMATICS (2015)
Identification of divergent type VI secretion effectors using a conserved chaperone domain
Xiaoye Liang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Secretome Analysis of Vibrio cholerae Type VI Secretion System Reveals a New Effector-Immunity Pair
Emrah Altindis et al.
MBIO (2015)
New Players in the Toxin Field: Polymorphic Toxin Systems in Bacteria
Anne Jamet et al.
MBIO (2015)
Type VI Secretion System Toxins Horizontally Shared between Marine Bacteria
Dor Salomon et al.
PLOS PATHOGENS (2015)
DISOPRED3: precise disordered region predictions with annotated protein-binding activity
David T. Jones et al.
BIOINFORMATICS (2015)
Scale-space measures for graph topology link protein network architecture to function
Marc Hulsman et al.
BIOINFORMATICS (2014)
Agrobacterium tumefaciens Deploys a Superfamily of Type VI Secretion DNase Effectors as Weapons for Interbacterial Competition In Planta
Lay-Sun Ma et al.
CELL HOST & MICROBE (2014)
A View to a Kill: The Bacterial Type VI Secretion System
Brian T. Ho et al.
CELL HOST & MICROBE (2014)
Genetically distinct pathways guide effector export through the type VI secretion system
John C. Whitney et al.
MOLECULAR MICROBIOLOGY (2014)
Marker for type VI secretion system effectors
Dor Salomon et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Accurate prediction of bacterial type IV secreted effectors using amino acid composition and PSSM profiles
Lingyun Zou et al.
BIOINFORMATICS (2013)
PPIevo: Protein-protein interaction prediction from PSSM based evolutionary information
Javad Zahiri et al.
GENOMICS (2013)
Lytic Activity of the Vibrio cholerae Type VI Secretion Toxin VgrG-3 Is Inhibited by the Antitoxin TsaB
Teresa M. Brooks et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2013)
PAAR-repeat proteins sharpen and diversify the type VI secretion system spike
Mikhail M. Shneider et al.
NATURE (2013)
Identification of T6SS-dependent effector and immunity proteins by Tn-seq in Vibrio cholerae
Tao G. Dong et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Rhs proteins from diverse bacteria mediate intercellular competition
Sanna Koskiniemi et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
The Opportunistic Pathogen Serratia marcescens Utilizes Type VI Secretion To Target Bacterial Competitors
Sarah L. Murdoch et al.
JOURNAL OF BACTERIOLOGY (2011)
Prediction of protein structural class for low-similarity sequences using support vector machine and PSI-BLAST profile
Taigang Liu et al.
BIOCHIMIE (2010)
Sequence-based prediction of protein interaction sites with an integrative method
Xue-Wen Chen et al.
BIOINFORMATICS (2009)
BLAST plus : architecture and applications
Christiam Camacho et al.
BMC BIOINFORMATICS (2009)
Comparative genomic analysis uncovers 3 novel loci encoding type six secretion systems differentially distributed in Salmonella serotypes
Carlos J. Blondel et al.
BMC GENOMICS (2009)
Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources?
Frederic Boyer et al.
BMC GENOMICS (2009)
The type VI secretion system: translocation of effectors and effector-domains
Stefan Pukatzki et al.
CURRENT OPINION IN MICROBIOLOGY (2009)
Characterization and prediction of residues determining protein functional specificity
John A. Capra et al.
BIOINFORMATICS (2008)
Type VI secretion system translocates a phage tail spike-like protein into target cells where it cross-links actin
Stefan Pukatzki et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
MemType-2L: A Web server for predicting membrane proteins and their types by incorporating evolution information through Pse-PSSM
Kuo-Chen Chou et al.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2007)
A virulence locus of Pseudomonas aeruginosa encodes a protein secretion apparatus
Joseph D. Mougous et al.
SCIENCE (2006)
Data mining in bioinformatics using Weka
E Frank et al.
BIOINFORMATICS (2004)
Prediction of protein subcellular locations by incorporating quasi-sequence-order effect
KC Chou
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2000)