4.7 Article

NGScloud: RNA-seq analysis of non-model species using cloud computing

Journal

BIOINFORMATICS
Volume 34, Issue 19, Pages 3405-3407

Publisher

OXFORD UNIV PRESS
DOI: 10.1093/bioinformatics/bty363

Keywords

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Funding

  1. Spanish National Parks Agency, Ministry of Agriculture [SPIP2014-01093]
  2. Spanish Ministry of Economy and Competitiveness [MINECO TIN2015-65469-P]
  3. Amazon Research Grant
  4. FedCloudNet [SPIP2014-01093]
  5. [AGL2015-67495-C2-2-R]

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RNA-seq analysis usually requires large computing infrastructures. NGScloud is a bioinformatic system developed to analyze RNA-seq data using the cloud computing services of Amazon that permit the access to ad hoc computing infrastructure scaled according to the complexity of the experiment, so its costs and times can be optimized. The application provides a userfriendly front-end to operate Amazon's hardware resources, and to control a workflow of RNA-seq analysis oriented to non-model species, incorporating the cluster concept, which allows parallel runs of common RNA-seq analysis programs in several virtual machines for faster analysis. Availability and implementation: NGScloud is freely available at https://github. com/GGFHF/ NGScloud/. A manual detailing installation and how-to-use instructions is available with the distribution.

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