Related references
Note: Only part of the references are listed.The challenge of on-tissue digestion for MALDI MSI- a comparison of different protocols to improve imaging experiments
Hanna C. Diehl et al.
ANALYTICAL AND BIOANALYTICAL CHEMISTRY (2015)
Evaluating Multiplexed Quantitative Phosphopeptide Analysis on a Hybrid Quadrupole Mass Filter/Linear Ion Trap/Orbitrap Mass Spectrometer
Brian K. Erickson et al.
ANALYTICAL CHEMISTRY (2015)
Highly Sensitive Phosphoproteomics by Tailoring Solid-Phase Extraction to Electrostatic Repulsion-Hydrophilic Interaction Chromatography
Stefan Loroch et al.
ANALYTICAL CHEMISTRY (2015)
Advances in mass spectrometry driven O-glycoproteomics
Steven B. Levery et al.
BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS (2015)
A guide into glycosciences: How chemistry, biochemistry and biology cooperate to crack the sugar code
Dolores Solis et al.
BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS (2015)
Multidimensional electrostatic repulsion-hydrophilic interaction chromatography (ERLIC) for quantitative analysis of the proteome and phosphoproteome in clinical and biomedical research
Stefan Loroch et al.
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS (2015)
Phospho-iTRAQ: Assessing Isobaric Labels for the Large-Scale Study Of Phosphopeptide Stoichiometry
Pieter Glibert et al.
JOURNAL OF PROTEOME RESEARCH (2015)
Quantitative proteome analysis of Caenorhabditis elegans upon exposure to nematicidal Bacillus thuringiensis
Christian Treitz et al.
JOURNAL OF PROTEOMICS (2015)
PeptideShaker enables reanalysis of MS-derived proteomics data sets
Marc Vaudel et al.
NATURE BIOTECHNOLOGY (2015)
Rapid mass spectrometric conversion of tissue biopsy samples into permanent quantitative digital proteome maps
Tiannan Guo et al.
NATURE MEDICINE (2015)
Coupling enrichment methods with proteomics for understanding and treating disease
Amit Kumar et al.
PROTEOMICS CLINICAL APPLICATIONS (2015)
Targeted methods for quantitative analysis of protein glycosylation
Radoslav Goldman et al.
PROTEOMICS CLINICAL APPLICATIONS (2015)
Discovering cancer biomarkers from clinical samples by protein microarrays
Bin Hu et al.
PROTEOMICS CLINICAL APPLICATIONS (2015)
Mass Spectrometry-Based Detection and Assignment of Protein Posttranslational Modifications
Sophia Doll et al.
ACS CHEMICAL BIOLOGY (2015)
High-Resolution Enabled 12-Plex DiLeu Isobaric Tags for Quantitative Proteomics
Dustin C. Frost et al.
ANALYTICAL CHEMISTRY (2015)
The glycosylation-dependent interaction of perlecan core protein with LDL: implications for atherosclerosis
Yu-Xin Xu et al.
JOURNAL OF LIPID RESEARCH (2015)
In Vivo Assessment of Protease Dynamics in Cutaneous Wound Healing by Degradomics Analysis of Porcine Wound Exudates
Fabio Sabino et al.
MOLECULAR & CELLULAR PROTEOMICS (2015)
Semi-quantitative Measurement of a Specific Glycoform Using a DNA-tagged Antibody and Lectin Affinity Chromatography for Glyco-biomarker Development
Ju Hee Lee et al.
MOLECULAR & CELLULAR PROTEOMICS (2015)
Comprehensive and Reproducible Phosphopeptide Enrichment Using Iron Immobilized Metal Ion Affinity Chromatography (Fe-IMAC) Columns
Benjamin Ruprecht et al.
MOLECULAR & CELLULAR PROTEOMICS (2015)
Hypoxia-induced p38 MAPK activation reduces Mcl-1 expression and facilitates sensitivity towards BH3 mimetics in chronic lymphocytic leukemia
M. F. Huelsemann et al.
LEUKEMIA (2015)
PhosphoSitePlus, 2014: mutations, PTMs and recalibrations
Peter V. Hornbeck et al.
NUCLEIC ACIDS RESEARCH (2015)
UniProt: a hub for protein information
Alex Bateman et al.
NUCLEIC ACIDS RESEARCH (2015)
C-terminomics: Targeted analysis of natural and posttranslationally modified protein and peptide C-termini
Sebastian Tanco et al.
PROTEOMICS (2015)
Effects of MEK inhibitors GSK1120212 and PD0325901 in vivo using 10-plex quantitative proteomics and phosphoproteomics
Joao A. Paulo et al.
PROTEOMICS (2015)
Neutron-Encoded Mass Signatures for Quantitative Top-Down Proteomics
Timothy W. Rhoads et al.
ANALYTICAL CHEMISTRY (2014)
Online Two-Dimensional Porous Graphitic Carbon/Reversed Phase Liquid Chromatography Platform Applied to Shotgun Proteomics and Glycoproteomics
Yun Zhao et al.
ANALYTICAL CHEMISTRY (2014)
Applying Label-Free Quantitation to Top Down Proteomics
Ioanna Ntai et al.
ANALYTICAL CHEMISTRY (2014)
Top Down proteomics: Facts and perspectives
Adam D. Catherman et al.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2014)
Advances in LC-MS/MS-based glycoproteomics: Getting closer to system-wide site-specific mapping of the N- and O-glycoproteome
Morten Thaysen-Andersen et al.
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS (2014)
Simultaneous characterization of sequence polymorphisms, glycosylation and phosphorylation of fibrinogen in a direct analysis by LC-MS
Tim Nagel et al.
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS (2014)
Time-resolved characterization of cAMP/PKA-dependent signaling reveals that platelet inhibition is a concerted process involving multiple signaling pathways
Florian Beck et al.
BLOOD (2014)
TAILS N-terminomics of human platelets reveals pervasive metalloproteinase-dependent proteolytic processing in storage
Anna Prudova et al.
BLOOD (2014)
Amyloid-β Peptide Induces Mitochondrial Dysfunction by Inhibition of Preprotein Maturation
Dirk Mossmann et al.
CELL METABOLISM (2014)
The role of protein glycosylation in Alzheimer disease
Sophia Schedin-Weiss et al.
FEBS JOURNAL (2014)
A Single Mechanism Can Explain Network-wide Insulin Resistance in Adipocytes from Obese Patients with Type 2 Diabetes
Elin Nyman et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2014)
Oligomer Formation of Tau Protein Hyperphosphorylated in Cells
Katharina Tepper et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2014)
The Emerging Link between O-GlcNAc and Alzheimer Disease
Yanping Zhu et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2014)
Protein phosphatases in pancreatic islets
Henrik Ortsater et al.
JOURNAL OF ENDOCRINOLOGY (2014)
Identification of Enriched PTM Crosstalk Motifs from Large-Scale Experimental Data Sets
Mao Peng et al.
JOURNAL OF PROTEOME RESEARCH (2014)
Rapid and Deep Proteomes by Faster Sequencing on a Benchtop Quadrupole Ultra-High-Field Orbitrap Mass Spectrometer
Christian D. Kelstrup et al.
JOURNAL OF PROTEOME RESEARCH (2014)
Using Mass Spectrometry to Monitor Monoclonal Immunoglobulins in Patients with a Monoclonal Gammopathy
David R. Barnidge et al.
JOURNAL OF PROTEOME RESEARCH (2014)
Impact of Digestion Conditions on Phosphoproteomics
Clarissa Dickhut et al.
JOURNAL OF PROTEOME RESEARCH (2014)
Assessing the Citrullinome in Rheumatoid Arthritis Synovial Fluid with and without Enrichment of Citrullinated Peptides
Astrid E. V. Tutturen et al.
JOURNAL OF PROTEOME RESEARCH (2014)
Top-Down Proteomics of a Drop of Blood for Diabetes Monitoring
Pan Mao et al.
JOURNAL OF PROTEOME RESEARCH (2014)
Carboxyterminal Protein Processing in Health and Disease: Key Actors and Emerging Technologies
Agnese Petrera et al.
JOURNAL OF PROTEOME RESEARCH (2014)
Glycoproteomics: Identifying the Glycosylation of Prostate Specific Antigen at Normal and High Isoelectric Points by LC-MS/MS
Ehwang Song et al.
JOURNAL OF PROTEOME RESEARCH (2014)
Comprehensive Mapping of Protein N-Glycosylation in Human Liver by Combining Hydrophilic Interaction Chromatography and Hydrazide Chemistry
Jun Zhu et al.
JOURNAL OF PROTEOME RESEARCH (2014)
Off-Line High-pH Reversed-Phase Fractionation for In-Depth Phosphoproteomics
Tanveer S. Batth et al.
JOURNAL OF PROTEOME RESEARCH (2014)
Large-scale characterization of intact N-glycopeptides using an automated glycoproteomic method
Kai Cheng et al.
JOURNAL OF PROTEOMICS (2014)
Absolute proteomic quantification of the activity state of proteases and proteolytic cleavages using proteolytic signature peptides and isobaric tags
Richard P. Fahlman et al.
JOURNAL OF PROTEOMICS (2014)
PeptidePicker: A scientific workflow with web interface for selecting appropriate peptides for targeted proteomics experiments
Yassene Mohammed et al.
JOURNAL OF PROTEOMICS (2014)
Integrated Glycoproteomics Demonstrates Fucosylated Serum Paraoxonase 1 Alterations in Small Cell Lung Cancer
Jung-Mo Ahn et al.
MOLECULAR & CELLULAR PROTEOMICS (2014)
Comprehensive Quantitative Comparison of the Membrane Proteome, Phosphoproteome, and Sialiome of Human Embryonic and Neural Stem Cells
Marcella Nunes Melo-Braga et al.
MOLECULAR & CELLULAR PROTEOMICS (2014)
The One Hour Yeast Proteome
Alexander S. Hebert et al.
MOLECULAR & CELLULAR PROTEOMICS (2014)
Hypoxia-induced Changes to Integrin α 3 Glycosylation Facilitate Invasion in Epidermoid Carcinoma Cell Line A431
Yan Ren et al.
MOLECULAR & CELLULAR PROTEOMICS (2014)
Single-step Enrichment by Ti4+-IMAC and Label-free Quantitation Enables In-depth Monitoring of Phosphorylation Dynamics with High Reproducibility and Temporal Resolution
Erik L. de Graaf et al.
MOLECULAR & CELLULAR PROTEOMICS (2014)
Expanding Proteome Coverage with Orthogonal-specificity-Lytic Proteases
Jesse G. Meyer et al.
MOLECULAR & CELLULAR PROTEOMICS (2014)
Glycoproteomic Analysis of Prostate Cancer Tissues by SWATH Mass Spectrometry Discovers N-acylethanolamine Acid Amidase and Protein Tyrosine Kinase 7 as Signatures for Tumor Aggressiveness
Yansheng Liu et al.
MOLECULAR & CELLULAR PROTEOMICS (2014)
Targeted Peptide Measurements in Biology and Medicine: Best Practices for Mass Spectrometry- based Assay Development Using a Fit- for- Purpose Approach
Steven A. Carr et al.
MOLECULAR & CELLULAR PROTEOMICS (2014)
Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ
Juergen Cox et al.
MOLECULAR & CELLULAR PROTEOMICS (2014)
Mass spectrometry based biomarker discovery, verification, and validation - Quality assurance and control of protein biomarker assays
Carol E. Parker et al.
MOLECULAR ONCOLOGY (2014)
Ultrasensitive proteome analysis using paramagnetic bead technology
Christopher S. Hughes et al.
MOLECULAR SYSTEMS BIOLOGY (2014)
ProteomeXchange provides globally coordinated proteomics data submission and dissemination
Juan A. Vizcaino et al.
NATURE BIOTECHNOLOGY (2014)
Middle-down hybrid chromatography/tandem mass spectrometry workflow for characterization of combinatorial post-translational modifications in histones
Simone Sidoli et al.
PROTEOMICS (2014)
Why have so few proteomic biomarkers survived validation? (Sample size and independent validation considerations)
Belinda Hernandez et al.
PROTEOMICS (2014)
Cell surface protein glycosylation in cancer
Maja N. Christiansen et al.
PROTEOMICS (2014)
The next level of complexity: Crosstalk of posttranslational modifications
A. Saskia Venne et al.
PROTEOMICS (2014)
The role of post-translational modifications in acute and chronic cardiovascular disease
Lauren E. Smith et al.
PROTEOMICS CLINICAL APPLICATIONS (2014)
Playing Hide and Seek: How Glycosylation of the Influenza Virus Hemagglutinin Can Modulate the Immune Response to Infection
Michelle D. Tate et al.
VIRUSES-BASEL (2014)
Roles of eIF2α kinases in the pathogenesis of Alzheimer's disease
Masuo Ohno
FRONTIERS IN MOLECULAR NEUROSCIENCE (2014)
Serum transferrin as a liver fibrosis biomarker in patients with chronic hepatitis B
Hyo Jung Cho et al.
CLINICAL AND MOLECULAR HEPATOLOGY (2014)
Mass spectrometry-based N-glycoproteomics for cancer biomarker discovery
Ying Zhang et al.
CLINICAL PROTEOMICS (2014)
Interleukin-like epithelial-to-mesenchymal transition inducer activity is controlled by proteolytic processing and plasminogen-urokinase plasminogen activator receptor system-regulated secretion during breast cancer progression
Agnes Csiszar et al.
BREAST CANCER RESEARCH (2014)
Enhanced Detection of Multiply Phosphorylated Peptides and Identification of Their Sites of Modification
Antoine Fleitz et al.
ANALYTICAL CHEMISTRY (2013)
Label-free quantification in clinical proteomics
Dominik A. Megger et al.
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS (2013)
Mesenchymal stem cells regulate epithelial-mesenchymal transition and tumor progression of pancreatic cancer cells
Ayano Kabashima-Niibe et al.
CANCER SCIENCE (2013)
When ubiquitination meets phosphorylation: a systems biology perspective of EGFR/MAPK signalling
Lan K. Nguyen et al.
CELL COMMUNICATION AND SIGNALING (2013)
Aberrant O-glycosylation and anti-glycan antibodies in an autoimmune disease IgA nephropathy and breast adenocarcinoma
Milada Stuchlova Horynova et al.
CELLULAR AND MOLECULAR LIFE SCIENCES (2013)
PhosphoproteomicsMore than meets the eye
Stefan Loroch et al.
ELECTROPHORESIS (2013)
N-linked glycoproteome profiling of human serum using tandem enrichment and multiple fraction concatenation
Cheng Ma et al.
ELECTROPHORESIS (2013)
Protein O-GlcNAcylation in diabetes and diabetic complications
Junfeng Ma et al.
EXPERT REVIEW OF PROTEOMICS (2013)
Deciphering post-translational modification codes
Adam P. Lothrop et al.
FEBS LETTERS (2013)
Endothelial heterogeneity and adhesion molecules N-glycosylation: Implications in leukocyte trafficking in inflammation
David W. Scott et al.
GLYCOBIOLOGY (2013)
Identifying Natural Substrates for Dipeptidyl Peptidases 8 and 9 Using Terminal Amine Isotopic Labeling of Substrates (TAILS) Reveals in Vivo Roles in Cellular Homeostasis and Energy Metabolism
Claire H. Wilson et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2013)
Application of a strong anion exchange material in electrostatic repulsion-hydrophilic interaction chromatography for selective enrichment of glycopeptides
Liwei Cao et al.
JOURNAL OF CHROMATOGRAPHY A (2013)
Toward a Comprehensive Characterization of a Human Cancer Cell Phosphoproteome
Houjiang Zhou et al.
JOURNAL OF PROTEOME RESEARCH (2013)
Quantitative Targeted Absolute Proteomics-Based Large-Scale Quantification of Proline-Hydroxylated α-Fibrinogen in Plasma for Pancreatic Cancer Diagnosis
Toshihiro Yoneyama et al.
JOURNAL OF PROTEOME RESEARCH (2013)
Statistical Design for Biospecimen Cohort Size in Proteomics-based Biomarker Discovery and Verification Studies
Steven J. Skates et al.
JOURNAL OF PROTEOME RESEARCH (2013)
Novel Highly Sensitive, Specific, and Straightforward Strategy for Comprehensive N-Terminal Proteomics Reveals Unknown Substrates of the Mitochondrial Peptidase Icp55
A. Saskia Venne et al.
JOURNAL OF PROTEOME RESEARCH (2013)
Site-Specific Glycan-Peptide Analysis for Determination of N-Glycoproteome Heterogeneity
Benjamin L. Parker et al.
JOURNAL OF PROTEOME RESEARCH (2013)
Mapping Proteolytic Processing in the Secretome of Gastric Cancer-Associated Myofibroblasts Reveals Activation of MMP-1, MMP-2, and MMP-3
Christopher Holmberg et al.
JOURNAL OF PROTEOME RESEARCH (2013)
Finding the same needles in the haystack? A comparison of phosphotyrosine peptides enriched by immuno-affinity precipitation and metal-based affinity chromatography
Serena Di Palma et al.
JOURNAL OF PROTEOMICS (2013)
Method and platform standardization in MRM-based quantitative plasma proteomics
Andrew J. Percy et al.
JOURNAL OF PROTEOMICS (2013)
Comparative evaluation of electrostatic repulsion-hydrophilic interaction chromatography (ERLIC) and high-pH reversed phase (Hp-RP) chromatography in profiling of rat kidney proteome
Piliang Hao et al.
JOURNAL OF PROTEOMICS (2013)
Quantitative phosphoproteomic profiling of human non-small cell lung cancer tumors
Devin K. Schweppe et al.
JOURNAL OF PROTEOMICS (2013)
Glycoengineered factor IX variants with improved pharmacokinetics and subcutaneous efficacy
A. R. Brooks et al.
JOURNAL OF THROMBOSIS AND HAEMOSTASIS (2013)
Quantification of the N-glycosylated Secretome by Super-SILAC During Breast Cancer Progression and in Human Blood Samples
Paul J. Boersema et al.
MOLECULAR & CELLULAR PROTEOMICS (2013)
A Critical Assessment of Feature Selection Methods for Biomarker Discovery in Clinical Proteomics
Christin Christin et al.
MOLECULAR & CELLULAR PROTEOMICS (2013)
Status of Large-scale Analysis of Post-translational Modifications by Mass Spectrometry
Jesper V. Olsen et al.
MOLECULAR & CELLULAR PROTEOMICS (2013)
Design, Implementation and Multisite Evaluation of a System Suitability Protocol for the Quantitative Assessment of Instrument Performance in Liquid Chromatography-Multiple Reaction Monitoring-MS (LC-MRM-MS)
Susan E. Abbatiello et al.
MOLECULAR & CELLULAR PROTEOMICS (2013)
LuciPHOr: Algorithm for Phosphorylation Site Localization with False Localization Rate Estimation Using Modified Target-Decoy Approach
Damian Fermin et al.
MOLECULAR & CELLULAR PROTEOMICS (2013)
A Classifier Based on Accurate Mass Measurements to Aid Large Scale, Unbiased Glycoproteomics
John W. Froehlich et al.
MOLECULAR & CELLULAR PROTEOMICS (2013)
Large-scale Top-down Proteomics of the Human Proteome: Membrane Proteins, Mitochondria, and Senescence
Adam D. Catherman et al.
MOLECULAR & CELLULAR PROTEOMICS (2013)
Enhanced Mass Spectrometric Mapping of the Human GalNAc-type O-Glycoproteome with SimpleCells
Sergey Y. Vakhrushev et al.
MOLECULAR & CELLULAR PROTEOMICS (2013)
Amine-reactive Neutron-encoded Labels for Highly Plexed Proteomic Quantitation
Alexander S. Hebert et al.
MOLECULAR & CELLULAR PROTEOMICS (2013)
Glycoproteomic Analysis of the Secretome of Human Endothelial Cells
Xiaoke Yin et al.
MOLECULAR & CELLULAR PROTEOMICS (2013)
Proteolytic Post-translational Modification of Proteins: Proteomic Tools and Methodology
Lindsay D. Rogers et al.
MOLECULAR & CELLULAR PROTEOMICS (2013)
Trials and tribulations of 'omics data analysis: assessing quality of SIMCA-based multivariate models using examples from pulmonary medicine
Asa M. Wheelock et al.
MOLECULAR BIOSYSTEMS (2013)
Neutron-encoded mass signatures for multiplexed proteome quantification
Alexander S. Hebert et al.
NATURE METHODS (2013)
Proteoform: a single term describing protein complexity
Lloyd M. Smith et al.
NATURE METHODS (2013)
Proteolytic Processing of Angiotensin-I in Human Blood Plasma
Diana Hildebrand et al.
PLOS ONE (2013)
D-score: A search engine independent MD-score
Marc Vaudel et al.
PROTEOMICS (2013)
Systems-Level Analysis of Proteolytic Events in Increased Vascular Permeability and Complement Activation in Skin Inflammation
Ulrich Auf Dem Keller et al.
SCIENCE SIGNALING (2013)
In Vivo SILAC-Based Proteomics Reveals Phosphoproteome Changes during Mouse Skin Carcinogenesis
Sara Zanivan et al.
CELL REPORTS (2013)
Proteases and Delayed Wound Healing
Sara M. McCarty et al.
ADVANCES IN WOUND CARE (2013)
Robust Analysis of the Yeast Proteome under 50 kDa by Molecular-Mass-Based Fractionation and Top-Down Mass Spectrometry
John F. Kellie et al.
ANALYTICAL CHEMISTRY (2012)
Toward Full Peptide Sequence Coverage by Dual Fragmentation Combining Electron-Transfer and Higher-Energy Collision Dissociation Tandem Mass Spectrometry
Christian K. Frese et al.
ANALYTICAL CHEMISTRY (2012)
N-glycoproteomics: mass spectrometry-based glycosylation site annotation
Yvonne Pasing et al.
BIOLOGICAL CHEMISTRY (2012)
Glycoprotein Profiles of Human Breast Cells Demonstrate a Clear Clustering of Normal/Benign versus Malignant Cell Lines and Basal versus Luminal Cell Lines
Ten-Yang Yen et al.
JOURNAL OF PROTEOME RESEARCH (2012)
Targeted Quantitative Phosphoproteomics Approach for the Detection of Phospho-tyrosine Signaling in Plants
Sharon C. Mithoe et al.
JOURNAL OF PROTEOME RESEARCH (2012)
A Complex Standard for Protein Identification, Designed by Evolution
Marc Vaudel et al.
JOURNAL OF PROTEOME RESEARCH (2012)
Integral Quantification Accuracy Estimation for Reporter Ion-based Quantitative Proteomics (iQuARI)
Marc Vaudel et al.
JOURNAL OF PROTEOME RESEARCH (2012)
Improve the Coverage for the Analysis of Phosphoproteome of HeLa Cells by a Tandem Digestion Approach
Yangyang Bian et al.
JOURNAL OF PROTEOME RESEARCH (2012)
Large-Scale Quantitative Assessment of Different In-Solution Protein Digestion Protocols Reveals Superior Cleavage Efficiency of Tandem Lys-C/Trypsin Proteolysis over Trypsin Digestion
Timo Glatter et al.
JOURNAL OF PROTEOME RESEARCH (2012)
A Strategy for Large-Scale Phosphoproteomics and SRM-Based Validation of Human Breast Cancer Tissue Samples
Ryohei Narumi et al.
JOURNAL OF PROTEOME RESEARCH (2012)
Systematic and quantitative comparison of digest efficiency and specificity reveals the impact of trypsin quality on MS-based proteomics
Julia Maria Burkhart et al.
JOURNAL OF PROTEOMICS (2012)
TiSH - a robust and sensitive global phosphoproteomics strategy employing a combination of TiO2, SIMAC, and HILIC
Kasper Engholm-Keller et al.
JOURNAL OF PROTEOMICS (2012)
A Novel Method for the Simultaneous Enrichment, Identification, and Quantification of Phosphopeptides and Sialylated Glycopeptides Applied to a Temporal Profile of Mouse Brain Development
Giuseppe Palmisano et al.
MOLECULAR & CELLULAR PROTEOMICS (2012)
Reanalysis of phosphoproteomics data uncovers ADP-ribosylation sites
Ivan Matic et al.
NATURE METHODS (2012)
PhosphoSitePlus: a comprehensive resource for investigating the structure and function of experimentally determined post-translational modifications in man and mouse
Peter V. Hornbeck et al.
NUCLEIC ACIDS RESEARCH (2012)
Pathogenesis of multiple sclerosis via environmental and genetic dysregulation of N-glycosylation
Ani Grigorian et al.
SEMINARS IN IMMUNOPATHOLOGY (2012)
Hepatocellualar Carcinoma Serum Markers
Gaetano Bertino et al.
SEMINARS IN ONCOLOGY (2012)
Microscale Phosphoproteome Analysis of 10 000 Cells from Human Cancer Cell Lines
Takeshi Masuda et al.
ANALYTICAL CHEMISTRY (2011)
Post-Translational Isoprenylation of Tryptophan
Masahiro Okada
BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY (2011)
Tumor Metastasis: Molecular Insights and Evolving Paradigms
Scott Valastyan et al.
CELL (2011)
Online combination of reversed-phase/reversed-phase and porous graphitic carbon liquid chromatography for multicomponent separation of proteomics and glycoproteomics samples
Maggie P. Y. Lam et al.
ELECTROPHORESIS (2011)
Increasing phosphoproteome coverage and identification of phosphorylation motifs through combination of different HPLC fractionation methods
Xi Chen et al.
JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES (2011)
Development and Application of a Phosphoproteomic Method Using Electrostatic Repulsion-Hydrophilic Interaction Chromatography (ERLIC), IMAC, and LC-MS/MS Analysis to Study Marek's Disease Virus Infection
Ko-yi Chien et al.
JOURNAL OF PROTEOME RESEARCH (2011)
Universal and Confident Phosphorylation Site Localization Using phosphoRS
Thomas Taus et al.
JOURNAL OF PROTEOME RESEARCH (2011)
Confident Phosphorylation Site Localization Using the Mascot Delta Score
Mikhail M. Savitski et al.
MOLECULAR & CELLULAR PROTEOMICS (2011)
Online Nanoflow Multidimensional Fractionation for High Efficiency Phosphopeptide Analysis
Scott B. Ficarro et al.
MOLECULAR & CELLULAR PROTEOMICS (2011)
Deep proteome and transcriptome mapping of a human cancer cell line
Nagarjuna Nagaraj et al.
MOLECULAR SYSTEMS BIOLOGY (2011)
Mapping intact protein isoforms in discovery mode using top-down proteomics
John C. Tran et al.
NATURE (2011)
MS3 eliminates ratio distortion in isobaric multiplexed quantitative proteomics
Lily Ting et al.
NATURE METHODS (2011)
Simultaneous Analysis of Proteome, Phospho- and Glycoproteome of Rat Kidney Tissue with Electrostatic Repulsion Hydrophilic Interaction Chromatography
Piliang Hao et al.
PLOS ONE (2011)
Site-specific characterization of threonine, serine, and tyrosine glycosylations of amyloid precursor protein/amyloid β-peptides in human cerebrospinal fluid
Adnan Halim et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
The good, the bad, the ugly: Validating the mass spectrometric analysis of modified peptides
Florian Beck et al.
PROTEOMICS (2011)
MALDI imaging mass spectrometry of human tissue: method challenges and clinical perspectives
Erin H. Seeley et al.
TRENDS IN BIOTECHNOLOGY (2011)
Peptide Labeling with Isobaric Tags Yields Higher Identification Rates Using iTRAQ 4-Plex Compared to TMT 6-Plex and iTRAQ 8-Plex on LTQ Orbitrap
Peter Pichler et al.
ANALYTICAL CHEMISTRY (2010)
N-terminal segment of proinsulin C-peptide active in insulin interaction/desaggregation
Charlotte Nerelius et al.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2010)
Serum Markers of Hepatocellular Carcinoma
Giulia Malaguarnera et al.
DIGESTIVE DISEASES AND SCIENCES (2010)
Crosstalk between C/EBPβ phosphorylation, arginine methylation, and SWI/SNF/Mediator implies an indexing transcription factor code
Elisabeth Kowenz-Leutz et al.
EMBO JOURNAL (2010)
Quantitative Proteomics Reveals Subset-Specific Viral Recognition in Dendritic Cells
Christian A. Luber et al.
IMMUNITY (2010)
Phosphoproteomic Analysis Reveals Site-Specific Changes in GFAP and NDRG2 Phosphorylation in Frontotemporal Lobar Degeneration
Jeremy H. Herskowitz et al.
JOURNAL OF PROTEOME RESEARCH (2010)
Classification of HER2 Receptor Status in Breast Cancer Tissues by MALDI Imaging Mass Spectrometry
Sandra Rauser et al.
JOURNAL OF PROTEOME RESEARCH (2010)
Undesirable Charge-Enhancement of Isobaric Tagged Phosphopeptides Leads to Reduced Identification Efficiency
Tine E. Thingholm et al.
JOURNAL OF PROTEOME RESEARCH (2010)
Simultaneous Characterization of Glyco- and Phosphoproteomes of Mouse Brain Membrane Proteome with Electrostatic Repulsion Hydrophilic Interaction Chromatography
Huoming Zhang et al.
MOLECULAR & CELLULAR PROTEOMICS (2010)
Addressing Accuracy and Precision Issues in iTRAQ Quantitation
Natasha A. Karp et al.
MOLECULAR & CELLULAR PROTEOMICS (2010)
Isotopic labeling of terminal amines in complex samples identifies protein N-termini and protease cleavage products
Oded Kleifeld et al.
NATURE BIOTECHNOLOGY (2010)
Super-SILAC mix for quantitative proteomics of human tumor tissue
Tamar Geiger et al.
NATURE METHODS (2010)
Selective enrichment of sialic acid-containing glycopeptides using titanium dioxide chromatography with analysis by HILIC and mass spectrometry
Giuseppe Palmisano et al.
NATURE PROTOCOLS (2010)
Preparation of monodisperse immobilized Ti4+ affinity chromatography microspheres for specific enrichment of phosphopeptides
Zhiyuan Yu et al.
ANALYTICA CHIMICA ACTA (2009)
Lys-N and Trypsin Cover Complementary Parts of the Phosphoproteome in a Refined SCX-Based Approach
Sharon Gauci et al.
ANALYTICAL CHEMISTRY (2009)
Caspases and Kinases in a Death Grip
Manabu Kurokawa et al.
CELL (2009)
Global Analysis of the Mitochondrial N-Proteome Identifies a Processing Peptidase Critical for Protein Stability
F. -Nora Voegtle et al.
CELL (2009)
Phosphorylation Dynamics during Early Differentiation of Human Embryonic Stem Cells
Dennis Van Hoof et al.
CELL STEM CELL (2009)
Methods for the proteomic identification of protease substrates
Nicholas J. Agard et al.
CURRENT OPINION IN CHEMICAL BIOLOGY (2009)
Normalization and Statistical Analysis of Quantitative Proteomics Data Generated by Metabolic Labeling
Lily Ting et al.
MOLECULAR & CELLULAR PROTEOMICS (2009)
Universal sample preparation method for proteome analysis
Jacek R. Wisniewski et al.
NATURE METHODS (2009)
Empirical Bayes Analysis of Quantitative Proteomics Experiments
Adam A. Margolin et al.
PLOS ONE (2009)
Quantitative analysis of cell signaling and drug action via mass spectrometry-based systems level phosphoproteomics
Nathan C. Tedford et al.
PROTEOMICS (2009)
Electrostatic repulsion hydrophilic interaction chromatography for isocratic separation of charged solutes and selective isolation of phosphopeptides
Andrew J. Alpert
ANALYTICAL CHEMISTRY (2008)
Investigations of the MceIJ-catalyzed posttranslational modification of the microcin E492 C-terminus: Linkage of ribosomal and nonribosomal peptides to form Trojan Horse antibiotics
Elizabeth M. Nolan et al.
BIOCHEMISTRY (2008)
Proteases: Multifunctional Enzymes in Life and Disease
Carlos Lopez-Otin et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2008)
A Comparative Study of Electrostatic Repulsion-Hydrophilic Interaction Chromatography (ERLIC) versus SCX-IMAC-Based Methods for Phosphopeptide Isolation/Enrichment
Chee Sian Gan et al.
JOURNAL OF PROTEOME RESEARCH (2008)
Top-down identification and characterization of biomolecules by mass spectrometry
Kathrin Breuker et al.
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY (2008)
Hydrophilic interaction chromatography reduces the complexity of the phosphoproteome and improves global phosphopeptide isolation and detection
Dean E. McNulty et al.
MOLECULAR & CELLULAR PROTEOMICS (2008)
Effect of glycosylation on protein folding: A close look at thermodynamic stabilization
Dalit Shental-Bechor et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
A quantitative atlas of mitotic phosphorylation
Noah Dephoure et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Improved recovery of proteome-informative, protein N-terminal peptides by combined fractional diagonal chromatography (COFRADIC)
An Staes et al.
PROTEOMICS (2008)
Glycosylation Site Analysis of Human Platelets by Electrostatic Repulsion Hydrophilic Interaction Chromatography
Urs Lewandrowski et al.
Clinical Proteomics (2008)
The age of crosstalk: Phosphorylation, ubiquitination, and beyond
Tony Hunter
MOLECULAR CELL (2007)
Enhanced N-glycosylation site analysis of Sialoglycopeptides by strong cation exchange prefractionation applied to platelet plasma membranes
Urs Lewandrowski et al.
MOLECULAR & CELLULAR PROTEOMICS (2007)
Decreased phosphorylation levels of cardiac myosin-binding protein-C in human and experimental heart failure
Ali El-Armouche et al.
JOURNAL OF MOLECULAR AND CELLULAR CARDIOLOGY (2007)
Global, in vivo, and site-specific phosphorylation dynamics in signaling networks
Jesper V. Olsen et al.
CELL (2006)
Modification of p53 with O-linked N-acetylglucosamine regulates p53 activity and stability
Won Ho Yang et al.
NATURE CELL BIOLOGY (2006)
A probability-based approach for high-throughput protein phosphorylation analysis and site localization
Sean A. Beausoleil et al.
NATURE BIOTECHNOLOGY (2006)
Statistical analysis of membrane proteome expression changes in Saccharomyces cerevisiae
Boris Zybailov et al.
JOURNAL OF PROTEOME RESEARCH (2006)
N-linked oligosaccharides as outfitters for glycoprotein folding, form and function
N Mitra et al.
TRENDS IN BIOCHEMICAL SCIENCES (2006)
PDSM, a motif for phosphorylation-dependent SUMO modification
V Hietakangas et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
PRIDE: The proteomics identifications database
L Martens et al.
PROTEOMICS (2005)
Control of mRNA translation preserves endoplasmic reticulum function in beta cells and maintains glucose homeostasis
D Scheuner et al.
NATURE MEDICINE (2005)
Sample preparation and digestion for proteomic analyses using spin filters
LL Manza et al.
PROTEOMICS (2005)
Glycoprotein-specific ubiquitin ligases recognize N-glycans in unfolded substrates
Y Yoshida et al.
EMBO REPORTS (2005)
Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway
A Gruhler et al.
MOLECULAR & CELLULAR PROTEOMICS (2005)
Myosin-binding protein C phosphorylation, myofibril structure, and contractile function during low-flow ischemia
RS Decker et al.
CIRCULATION (2005)
An empirical bayes adjustment to increase the sensitivity of detecting differentially expressed genes in microarray experiments
S Datta et al.
BIOINFORMATICS (2004)
limmaGUI: A graphical user interface for linear modeling of microarray data
JM Wettenhall et al.
BIOINFORMATICS (2004)
Selective isolation at the femtomole level of phosphopeptides from proteolytic digests using 2D-nanoLC-ESI-MS/MS and titanium oxide precolumns
MWH Pinkse et al.
ANALYTICAL CHEMISTRY (2004)
Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents
PL Ross et al.
MOLECULAR & CELLULAR PROTEOMICS (2004)
A neutral loss activation method for improved phosphopeptide sequence analysis by quadrupole ion trap mass spectrometry
MJ Schroeder et al.
ANALYTICAL CHEMISTRY (2004)
Quantification of proteins and metabolites by mass spectrometry without isotopic labeling or spiked standards
WX Wang et al.
ANALYTICAL CHEMISTRY (2003)
Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides
K Gevaert et al.
NATURE BIOTECHNOLOGY (2003)
Tandem mass tags:: A novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS
A Thompson et al.
ANALYTICAL CHEMISTRY (2003)
Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: The yeast proteome
JM Peng et al.
JOURNAL OF PROTEOME RESEARCH (2003)
Functional diversity of protein C-termini: more than zipcoding?
JJ Chung et al.
TRENDS IN CELL BIOLOGY (2002)
Intracellular functions of N-linked glycans
A Helenius et al.
SCIENCE (2001)
Macrothrombocytopenia with abnormal demarcation membranes in megakaryocytes and neutropenia with a complete lack of sialyl-Lewis-X antigen in leukocytes -: a new syndrome?
TN Willig et al.
BLOOD (2001)
Synergistic coupling of histone H3 phosphorylation and acetylation in response to epidermal growth factor stimulation
P Cheung et al.
MOLECULAR CELL (2000)
Share Paper
