Related references
Note: Only part of the references are listed.Irrational exuberance for resolved species trees
Matthew W. Hahn et al.
EVOLUTION (2016)
A Genome-Scale Investigation of How Sequence, Function, and Tree-Based Gene Properties Influence Phylogenetic Inference
Xing-Xing Shen et al.
GENOME BIOLOGY AND EVOLUTION (2016)
The effects of subsampling gene trees on coalescent methods applied to ancient divergences
Mark P. Simmons et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2016)
Implementing and testing the multispecies coalescent model: A valuable paradigm for phylogenomics
Scott V. Edwards et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2016)
The gene tree delusion
Mark S. Springer et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2016)
Phylogenomics for Systematic Biology
David Posada
SYSTEMATIC BIOLOGY (2016)
A comparative study of SVDquartets and other coalescent-based species tree estimation methods
Jed Chou et al.
BMC GENOMICS (2015)
A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing
Richard O. Prum et al.
NATURE (2015)
Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent model (vol 109, pg 14942, 2012)
Sen Song et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Genomic data do not support comb jellies as the sister group to all other animals
Davide Pisani et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Error, signal, and the placement of Ctenophora sister to all other animals
Nathan V. Whelan et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Rapid genome reshaping by multiple-gene loss after whole-genome duplication in teleost fish suggested by mathematical modeling
Jun Inoue et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Response to Comment on Statistical binning enables an accurate coalescent-based estimation of the avian tree
Siavash Mirarab et al.
SCIENCE (2015)
Comment on Statistical binning enables an accurate coalescent-based estimation of the avian tree
Liang Liu et al.
SCIENCE (2015)
On the Robustness to Gene Tree Estimation Error (or lack thereof) of Coalescent-Based Species Tree Methods
Sebastien Roch et al.
SYSTEMATIC BIOLOGY (2015)
Selecting Question-Specific Genes to Reduce Incongruence in Phylogenomics: A Case Study of Jawed Vertebrate Backbone Phylogeny
Meng-Yun Chen et al.
SYSTEMATIC BIOLOGY (2015)
The Dynamics of Incomplete Lineage Sorting across the Ancient Adaptive Radiation of Neoavian Birds
Alexander Suh et al.
PLOS BIOLOGY (2015)
Weighted Statistical Binning: Enabling Statistically Consistent Genome-Scale Phylogenetic Analyses
Md Shamsuzzoha Bayzid et al.
PLOS ONE (2015)
Animal Phylogeny and Its Evolutionary Implications
Casey W. Dunn et al.
ANNUAL REVIEW OF ECOLOGY, EVOLUTION, AND SYSTEMATICS, VOL 45 (2014)
Quartet Inference from SNP Data Under the Coalescent Model
Julia Chifman et al.
BIOINFORMATICS (2014)
Phylogenomic Interrogation of Arachnida Reveals Systemic Conflicts in Phylogenetic Signal
Prashant P. Sharma et al.
MOLECULAR BIOLOGY AND EVOLUTION (2014)
ExaBayes: Massively Parallel Bayesian Tree Inference for the Whole-Genome Era
Andre J. Aberer et al.
MOLECULAR BIOLOGY AND EVOLUTION (2014)
Phylogenetic analysis at deep timescales: Unreliable gene trees, bypassed hidden support, and the coalescence/concatalescence conundrum
John Gatesy et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2014)
Statistical binning enables an accurate coalescent-based estimation of the avian tree
Siavash Mirarab et al.
SCIENCE (2014)
Whole-genome analyses resolve early branches in the tree of life of modern birds
Erich D. Jarvis et al.
SCIENCE (2014)
Conserved Genes, Sampling Error, and Phylogenomic Inference
Ricardo Betancur-R et al.
SYSTEMATIC BIOLOGY (2014)
Capturing protein-coding genes across highly divergent species
Chenhong Li et al.
BIOTECHNIQUES (2013)
Revisiting fitting monotone polynomials to data
Kevin Murray et al.
COMPUTATIONAL STATISTICS (2013)
EVOLUTIONARY ORIGIN AND EARLY BIOGEOGRAPHY OF OTOPHYSAN FISHES (OSTARIOPHYSI: TELEOSTEI)
Wei-Jen Chen et al.
EVOLUTION (2013)
Less Is More in Mammalian Phylogenomics: AT-Rich Genes Minimize Tree Conflicts and Unravel the Root of Placental Mammals
Jonathan Romiguier et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
Inferring ancient divergences requires genes with strong phylogenetic signals
Leonidas Salichos et al.
NATURE (2013)
STRAW: Species TRee Analysis Web server
Timothy I. Shaw et al.
NUCLEIC ACIDS RESEARCH (2013)
The Genome of the Ctenophore Mnemiopsis leidyi and Its Implications for Cell Type Evolution
Joseph F. Ryan et al.
SCIENCE (2013)
TreeFix: Statistically Informed Gene Tree Error Correction Using Species Trees
Yi-Chieh Wu et al.
SYSTEMATIC BIOLOGY (2013)
Addressing Gene Tree Discordance and Non-Stationarity to Resolve a Multi-Locus Phylogeny of the Flatfishes (Teleostei: Pleuronectiformes)
Ricardo Betancur-R. et al.
SYSTEMATIC BIOLOGY (2013)
Anomalous Unrooted Gene Trees
James H. Degnan
SYSTEMATIC BIOLOGY (2013)
MEGA-CC: computing core of molecular evolutionary genetics analysis program for automated and iterative data analysis
Sudhir Kumar et al.
BIOINFORMATICS (2012)
EvolMarkers: a database for mining exon and intron markers for evolution, ecology and conservation studies
Chenhong Li et al.
MOLECULAR ECOLOGY RESOURCES (2012)
Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent model
Sen Song et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Resolution of ray-finned fish phylogeny and timing of diversification
Thomas J. Near et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Evolutionary history of Otophysi (Teleostei), a major clade of the modern freshwater fishes: Pangaean origin and Mesozoic radiation
Masanori Nakatani et al.
BMC EVOLUTIONARY BIOLOGY (2011)
Identifying the rooted species tree from the distribution of unrooted gene trees under the coalescent
Elizabeth S. Allman et al.
JOURNAL OF MATHEMATICAL BIOLOGY (2011)
Estimating Species Trees from Unrooted Gene Trees
Liang Liu et al.
SYSTEMATIC BIOLOGY (2011)
Resolving Difficult Phylogenetic Questions: Why More Sequences Are Not Enough
Herve Philippe et al.
PLOS BIOLOGY (2011)
Bayesian Inference of Species Trees from Multilocus Data
Joseph Heled et al.
MOLECULAR BIOLOGY AND EVOLUTION (2010)
Target-enrichment strategies for next-generation sequencing
Lira Mamanova et al.
NATURE METHODS (2010)
TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations
Federico Abascal et al.
NUCLEIC ACIDS RESEARCH (2010)
FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix
Morgan N. Price et al.
MOLECULAR BIOLOGY AND EVOLUTION (2009)
Nine exceptional radiations plus high turnover explain species diversity in jawed vertebrates
Michael E. Alfaro et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Estimating Species Phylogenies Using Coalescence Times among Sequences
Liang Liu et al.
SYSTEMATIC BIOLOGY (2009)
Gene tree discordance, phylogenetic inference and the multispecies coalescent
James H. Degnan et al.
TRENDS IN ECOLOGY & EVOLUTION (2009)
TNT, a free program for phylogenetic analysis
Pablo A. Goloboff et al.
CLADISTICS (2008)
New insights into the organization and evolution of vertebrate IRBP genes and utility of IRBP gene sequences for the phylogenetic study of the Acanthomorpha (Actinopterygii: Teleostei)
Agnes Dettai et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2008)
High-resolution species trees without concatenation
Scott V. Edwards et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
A practical approach to phylogenomics: the phylogeny of ray-finned fish (Actinopterygii) as a case study
Chenhong Li et al.
BMC EVOLUTIONARY BIOLOGY (2007)
Inconsistency of phylogenetic estimates from concatenated data under coalescence
Laura Salter Kubatko et al.
SYSTEMATIC BIOLOGY (2007)
Phylogenomics: the beginning of incongruence?
O Jeffroy et al.
TRENDS IN GENETICS (2006)
Molecular systematics of the gonorynchiform fishes (Teleostei) based on whole mitogenome sequences:: Implications for higher-level relationships within the Otocephala
S Lavoué et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2005)
Analysis and visualization of tree space
DM Hillis et al.
SYSTEMATIC BIOLOGY (2005)
APE: Analyses of Phylogenetics and Evolution in R language
E Paradis et al.
BIOINFORMATICS (2004)
Genome-scale approaches to resolving incongruence in molecular phylogenies
A Rokas et al.
NATURE (2003)
Mitochondrial genomics of ostariophysan fishes: Perspectives on phylogeny and biogeography
K Saitoh et al.
JOURNAL OF MOLECULAR EVOLUTION (2003)
An approximately unbiased test of phylogenetic tree selection
H Shimodaira
SYSTEMATIC BIOLOGY (2002)
CONSEL: for assessing the confidence of phylogenetic tree selection
H Shimodaira et al.
BIOINFORMATICS (2001)
Share Paper
