Related references
Note: Only part of the references are listed.Metabolite Diversity in Alkaloid Biosynthesis: A Multilane (Diastereomer) Highway for Camptothecin Synthesis in Camptotheca acuminata
Radin Sadre et al.
PLANT CELL (2016)
Genome Reduction Uncovers a Large Dispensable Genome and Adaptive Role for Copy Number Variation in Asexually Propagated Solanum tuberosum
Michael A. Hardigan et al.
PLANT CELL (2016)
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
Felipe A. Simao et al.
BIOINFORMATICS (2015)
Genome-guided investigation of plant natural product biosynthesis
Franziska Kellner et al.
PLANT JOURNAL (2015)
OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy
David M. Emms et al.
GENOME BIOLOGY (2015)
NextClip: an analysis and read preparation tool for Nextera Long Mate Pair libraries
Richard M. Leggett et al.
BIOINFORMATICS (2014)
Gene clustering in plant specialized metabolism
Hans-Wilhelm Nuetzmann et al.
CURRENT OPINION IN BIOTECHNOLOGY (2014)
MAKER-P: A Tool Kit for the Rapid Creation, Management, and Quality Control of Plant Genome Annotations
Michael S. Campbell et al.
PLANT PHYSIOLOGY (2014)
Genomic Signatures of Specialized Metabolism in Plants
Lee Chae et al.
SCIENCE (2014)
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
Brian J. Haas et al.
NATURE PROTOCOLS (2013)
Coupling Deep Transcriptome Analysis with Untargeted Metabolic Profiling in Ophiorrhiza pumila to Further the Understanding of the Biosynthesis of the Anti-Cancer Alkaloid Camptothecin and Anthraquinones
Mami Yamazaki et al.
PLANT AND CELL PHYSIOLOGY (2013)
Biosynthesis of Antinutritional Alkaloids in Solanaceous Crops Is Mediated by Clustered Genes
M. Itkin et al.
SCIENCE (2013)
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
Daehwan Kim et al.
GENOME BIOLOGY (2013)
Development of Transcriptomic Resources for Interrogating the Biosynthesis of Monoterpene Indole Alkaloids in Medicinal Plant Species
Elsa Gongora-Castillo et al.
PLOS ONE (2012)
Plant Gene Clusters and Opiates
Dean DellaPenna et al.
SCIENCE (2012)
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
Ruibang Luo et al.
GIGASCIENCE (2012)
Pyrosequencing of the Camptotheca acuminata transcriptome reveals putative genes involved in camptothecin biosynthesis and transport
Yongzhen Sun et al.
BMC GENOMICS (2011)
Full-length transcriptome assembly from RNA-Seq data without a reference genome
Manfred G. Grabherr et al.
NATURE BIOTECHNOLOGY (2011)
High-quality draft assemblies of mammalian genomes from massively parallel sequence data
Sante Gnerre et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Accelerated Profile HMM Searches
Sean R. Eddy
PLOS COMPUTATIONAL BIOLOGY (2011)
MITE-Hunter: a program for discovering miniature inverted-repeat transposable elements from genomic sequences
Yujun Han et al.
NUCLEIC ACIDS RESEARCH (2010)
BLAST plus : architecture and applications
Christiam Camacho et al.
BMC BIOINFORMATICS (2009)
An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III
BOTANICAL JOURNAL OF THE LINNEAN SOCIETY (2009)
Importance of lineage-specific expansion of plant tandem duplicates in the adaptive response to environmental stimuli
Kousuke Hanada et al.
PLANT PHYSIOLOGY (2008)
A Role for Gene Duplication and Natural Variation of Gene Expression in the Evolution of Metabolism
Daniel J. Kliebenstein
PLOS ONE (2008)
Mutations in topoisomerase I as a self-resistance mechanism coevolved with the production of the anticancer alkaloid camptothecin in plants
Supaart Sirikantaramas et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints
M Stanke et al.
NUCLEIC ACIDS RESEARCH (2005)
Molecules of interest - Camptothecin, over four decades of surprising findings
A Lorence et al.
PHYTOCHEMISTRY (2004)
Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies
BJ Haas et al.
NUCLEIC ACIDS RESEARCH (2003)
Gene duplication in the diversification of secondary metabolism: Tandem 2-oxoglutarate-dependent dioxygenases control glucosinolate biosynthesis in arabidopsis
DJ Kliebenstein et al.
PLANT CELL (2001)