Related references
Note: Only part of the references are listed.Gapped sequence alignment using artificial neural networks: application to the MHC class I system
Massimo Andreatta et al.
BIOINFORMATICS (2016)
NetMHCpan-3.0; improved prediction of binding to MHC class I molecules integrating information from multiple receptor and peptide length datasets
Morten Nielsen et al.
GENOME MEDICINE (2016)
Accurate pan-specific prediction of peptide-MHC class II binding affinity with improved binding core identification
Massimo Andreatta et al.
IMMUNOGENETICS (2015)
Development and validation of a broad scheme for prediction of HLA class II restricted T cell epitopes
Sinu Paul et al.
JOURNAL OF IMMUNOLOGICAL METHODS (2015)
The I-TASSER Suite: protein structure and function prediction
Jianyi Yang et al.
NATURE METHODS (2015)
The immune epitope database (IEDB) 3.0
Randi Vita et al.
NUCLEIC ACIDS RESEARCH (2015)
Allele frequency net 2015 update: new features for HLA epitopes, KIR and disease and HLA adverse drug reaction associations
Faviel F. Gonzalez-Galarza et al.
NUCLEIC ACIDS RESEARCH (2015)
Dataset size and composition impact the reliability of performance benchmarks for peptide-MHC binding predictions
Yohan Kim et al.
BMC BIOINFORMATICS (2014)
Antibody structural modeling with prediction of immunoglobulin structure (PIGS)
Paolo Marcatili et al.
NATURE PROTOCOLS (2014)
Evaluating the Immunogenicity of Protein Drugs by Applying In Vitro MHC Binding Data and the Immune Epitope Database and Analysis Resource
Sinu Paul et al.
CLINICAL & DEVELOPMENTAL IMMUNOLOGY (2013)
NetMHCIIpan-3.0, a common pan-specific MHC class II prediction method including all three human MHC class II isotypes, HLA-DR, HLA-DP and HLA-DQ
Edita Karosiene et al.
IMMUNOGENETICS (2013)
MHC-NP: Predicting peptides naturally processed by the MHC
Sebastien Giguere et al.
JOURNAL OF IMMUNOLOGICAL METHODS (2013)
HLA Class I Alleles Are Associated with Peptide-Binding Repertoires of Different Size, Affinity, and Immunogenicity
Sinu Paul et al.
JOURNAL OF IMMUNOLOGY (2013)
Comprehensive analysis of dengue virus-specific responses supports an HLA-linked protective role for CD8+ T cells
Daniela Weiskopf et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Properties of MHC Class I Presented Peptides That Enhance Immunogenicity
Jorg J. A. Calis et al.
PLOS COMPUTATIONAL BIOLOGY (2013)
Toward more accurate pan-specific MHC-peptide binding prediction: a review of current methods and tools
Lianming Zhang et al.
BRIEFINGS IN BIOINFORMATICS (2012)
NetMHCcons: a consensus method for the major histocompatibility complex class I predictions
Edita Karosiene et al.
IMMUNOGENETICS (2012)
The Utility and Limitations of Current Web-Available Algorithms To Predict Peptides Recognized by CD4 T Cells in Response to Pathogen Infection
Francisco A. Chaves et al.
JOURNAL OF IMMUNOLOGY (2012)
Immune epitope database analysis resource
Yohan Kim et al.
NUCLEIC ACIDS RESEARCH (2012)
Reliable B Cell Epitope Predictions: Impacts of Method Development and Improved Benchmarking
Jens Vindahl Kringelum et al.
PLOS COMPUTATIONAL BIOLOGY (2012)
Functional classification of class II human leukocyte antigen (HLA) molecules reveals seven different supertypes and a surprising degree of repertoire sharing across supertypes
Jason Greenbaum et al.
IMMUNOGENETICS (2011)
Peptide binding predictions for HLA DR, DP and DQ molecules
Peng Wang et al.
BMC BIOINFORMATICS (2010)
NetCTLpan: pan-specific MHC class I pathway epitope predictions
Thomas Stranzl et al.
IMMUNOGENETICS (2010)
Molecular Determinants of T Cell Epitope Recognition to the Common Timothy Grass Allergen
Carla Oseroff et al.
JOURNAL OF IMMUNOLOGY (2010)
Nomenclature for factors of the HLA system, 2010
S. G. E. Marsh et al.
TISSUE ANTIGENS (2010)
The PickPocket method for predicting binding specificities for receptors based on receptor pocket similarities: application to MHC-peptide binding
Hao Zhang et al.
BIOINFORMATICS (2009)
Derivation of an amino acid similarity matrix for peptide: MHC binding and its application as a Bayesian prior
Yohan Kim et al.
BMC BIOINFORMATICS (2009)
NN-align. An artificial neural network-based alignment algorithm for MHC class II peptide binding prediction
Morten Nielsen et al.
BMC BIOINFORMATICS (2009)
Epitopia: a web-server for predicting B-cell epitopes
Nimrod D. Rubinstein et al.
BMC BIOINFORMATICS (2009)
NetMHCpan, a method for MHC class I binding prediction beyond humans
Ilka Hoof et al.
IMMUNOGENETICS (2009)
RosettaAntibody: antibody variable region homology modeling server
Aroop Sircar et al.
NUCLEIC ACIDS RESEARCH (2009)
PEPITO: improved discontinuous B-cell epitope prediction using multiple distance thresholds and half sphere exposure
Michael J. Sweredoski et al.
BIOINFORMATICS (2008)
Accurate approximation method for prediction of class I MHC affinities for peptides of length 8, 10 and 11 using prediction tools trained on 9mers
Claus Lundegaard et al.
BIOINFORMATICS (2008)
ElliPro: a new structure-based tool for the prediction of antibody epitopes
Julia Ponomarenko et al.
BMC BIOINFORMATICS (2008)
I-TASSER server for protein 3D structure prediction
Yang Zhang
BMC BIOINFORMATICS (2008)
Immune epitope database analysis resource (IEDB-AR)
Qing Zhang et al.
NUCLEIC ACIDS RESEARCH (2008)
NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8-11
Claus Lundegaard et al.
NUCLEIC ACIDS RESEARCH (2008)
FireDock: a web server for fast interaction refinement in molecular docking
Efrat Mashiach et al.
NUCLEIC ACIDS RESEARCH (2008)
Quantitative Predictions of Peptide Binding to Any HLA-DR Molecule of Known Sequence: NetMHCIIpan
Morten Nielsen et al.
PLOS COMPUTATIONAL BIOLOGY (2008)
A systematic assessment of MHC class II peptide binding predictions and evaluation of a consensus approach
Peng Wang et al.
PLOS COMPUTATIONAL BIOLOGY (2008)
Antibody-protein interactions: benchmark datasets and prediction tools evaluation
Julia V. Ponomarenko et al.
BMC STRUCTURAL BIOLOGY (2007)
FireDock: Fast interaction refinement in molecular docking
Nelly Andrusier et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2007)
NetMHCpan, a Method for Quantitative Predictions of Peptide Binding to Any HLA-A and -B Locus Protein of Known Sequence
Morten Nielsen et al.
PLOS ONE (2007)
Prediction of MHC class II binding affinity using SMM-align, a novel stabilization matrix alignment method
Morten Nielsen et al.
BMC BIOINFORMATICS (2007)
A quantitative analysis of the variables affecting the repertoire of T cell specificities recognized after vaccinia virus infection
Erika Assarsson et al.
JOURNAL OF IMMUNOLOGY (2007)
Ab and T cell epitopes of influenza A virus, knowledge and opportunities
Huynh-Hoa Bui et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
The validity of predicted T-cell epitopes
Claus Lundegaard et al.
TRENDS IN BIOTECHNOLOGY (2006)
Prediction of residues in discontinuous B-cell epitopes using protein 3D structures
Pernille Haste Andersen et al.
PROTEIN SCIENCE (2006)
A consensus epitope prediction approach identifies the breadth of murine TCD8+-cell responses to vaccinia virus
Magdalini Moutaftsi et al.
NATURE BIOTECHNOLOGY (2006)
A community resource benchmarking predictions of peptide binding to MHC-I molecules
Bjoern Peters et al.
PLOS COMPUTATIONAL BIOLOGY (2006)
Predicting population coverage of T-cell epitope-based diagnostics and vaccines
Huynh-Hoa Bui et al.
BMC BIOINFORMATICS (2006)
The use of receiver operating characteristic curves in biomedical informatics
TA Lasko et al.
JOURNAL OF BIOMEDICAL INFORMATICS (2005)
An integrative approach to CTL epitope prediction: A combined algorithm integrating MHC class I binding, TAP transport efficiency, and proteasomal cleavage predictions
MV Larsen et al.
EUROPEAN JOURNAL OF IMMUNOLOGY (2005)
PatchDock and SymmDock: servers for rigid and symmetric docking
D Schneidman-Duhovny et al.
NUCLEIC ACIDS RESEARCH (2005)
Generating quantitative models describing the sequence specificity of biological processes with the stabilized matrix method
B Peters et al.
BMC BIOINFORMATICS (2005)
Modeling the MHC class I pathway by combining predictions of proteasomal cleavage, TAP transport and MHC class I binding
S Tenzer et al.
CELLULAR AND MOLECULAR LIFE SCIENCES (2005)
The role of the proteasome in generating cytotoxic T-cell epitopes: insights obtained from improved predictions of proteasomal cleavage
M Nielsen et al.
IMMUNOGENETICS (2005)
Rationally engineered therapeutic proteins with reduced immunogenicity
S Tangri et al.
JOURNAL OF IMMUNOLOGY (2005)
ClusPro: a fully automated algorithm for protein-protein docking
SR Comeau et al.
NUCLEIC ACIDS RESEARCH (2004)
Sensitive quantitative predictions of peptide-MHC binding by a 'Query by Committee' artificial neural network approach
S Buus et al.
TISSUE ANTIGENS (2003)
Identifying MHC class I epitopes by predicting the TAP transport efficiency of epitope precursors
B Peters et al.
JOURNAL OF IMMUNOLOGY (2003)
Reliable prediction of T-cell epitopes using neural networks with novel sequence representations
M Nielsen et al.
PROTEIN SCIENCE (2003)
Assessment of proteasomal cleavage probabilities from kinetic analysis of time-dependent product formation
B Peters et al.
JOURNAL OF MOLECULAR BIOLOGY (2002)
Prediction of proteasome cleavage motifs by neural networks
C Kesmir et al.
PROTEIN ENGINEERING (2002)
Share Paper
