Molecular transitions as probes of the physical conditions of extragalactic environments

Aims. We present a method to interpret molecular observations and molecular line ratios in nearby extragalactic regions. Methods. Ab initio grids of time dependent chemical models, varying in gas density, temperature, cosmic ray ionization rate, and radiation field, are used as inputs into RADEX calculations. Tables of abundances, column densities, theoretical line intensities, and line ratios for some of the most used dense gas tracers are provided. The degree of correlation as well as degeneracy inherent in molecular ratios is discussed. Comparisons of the theoretical intensities with example observations are also provided. Results. We find that, within the parameters space explored, chemical abundances can be constrained by a well-defined set of gas density, gas temperature, and cosmic ray ionization rates for the species we investigate here. However, line intensities, and more importantly line ratios, from different chemical models can be very similar, thereby leading to a clear degeneracy. We also find that the gas subjected to a galactic cosmic ray ionization rate will not necessarily have reached steady state in 1 million years. The species most affected by time dependency effects are HCN and CS, which are both high density tracers. We use our ab initio method to fit an example set of data from two galaxies, i.e. M82 and NGC 253. We find that (i) molecular line ratios can be easily matched even with erroneous individual line intensities; (ii) no set of species can be matched by a one-component interstellar medium (ISM); and (iii) a species may be a good tracer of an energetic process but only under specific density and temperature conditions. Conclusions. We provide tables of chemical abundances and line intensities ratios for some of the most commonly observed extragalactic tracers of dense gas for a grid of models. We show that by taking the chemistry behind each species and the individual line intensities into consideration, many degeneracies that arise by just using molecular line ratios can be avoided. Finally we show that using a species or a ratio as a tracer of an individual energetic process, such as cosmic rays and UV, ought to be done with caution.